Click here to switch to the map view.

The map label for this gene is rapD [H]

Identifier: 52784701

GI number: 52784701

Start: 927617

End: 928657

Strand: Direct

Name: rapD [H]

Synonym: BLi00922

Alternate gene names: 52784701

Gene position: 927617-928657 (Clockwise)

Preceding gene: 52784700

Following gene: 52784705

Centisome position: 21.97

GC content: 40.06

Gene sequence:

>1041_bases
ATGAAAGCAGCAGCCTCTGTGAACGTAGCCAATCTCATCAATCAGTGGTATGTTCACATAAAAAAGAGAGATGTTTCAAA
TGCCGTAGAACTTAGGGACAGAATAAAAGGCCTTTTAAACGTAATGGAAGAAGATCAGGATGTTTTGCTTTACTTTAATC
TACTTGATTACAGGTTCAGAGTATTAATGGAAGACGTCGCGGGGGAGCCGCAGCTTCCGCCTATTGCTGAAGATAAGGCG
AAGACAGACGGTTTGTTACGATACTATTACTTTCTCTTTAAAGGAATGTATGAAAGTGCGAGGAGCAACTACTCTAAAGC
GCTTAATTGTTTTAGAGTTGCCGAGCGGCAGCTCGATAATGTCGAAGATGAAATCGAAAAGGCCGAGTTTCATTATAAGC
TTGGAAATCTCTATTATTTTACGAAAACAACTCTACTTTCTTTTCATCATCTTTCAATCGCGAAGAGCATTTATAGGGCT
TATGAAGAATATAAGACACAGTCGATAAACTGTACGGTGCTGCTCGCACTCAATTATATAGACGACGGACGTTTAACAAG
AGCTGAAAATATGCTTAAGAGTTGCGCAGAAAGACTGATCAAGATGGGCGATAATCATCTGCTGGCGGCTGTCTACTATG
ATCTCGGCTTTTTAAAAATTCAAGAGGATAAACATGAAGAAGCACTCGAGTATTTCGACCTCTCATTTAAAACGGATGAT
ATCGAAAAAAATGCGCCTATTATGTACATGCAGTGCATATACGAGTCAGCTAGGTCAACTTATAAGATAGGTGAGGTTGA
TAAGGCGCTTAAGTGGGTTCATCTTGGTTTTGAGTTTGCTCAGAAAACGGATAATATCAACTTTTCGCTCAAATTCTCGA
TTCTAAATATATGCTATAGCGCTCCCATCGAGGGTGTACCGCAAGTAAAAGAGTTTATCGAAATGCTCGAGGAGAGAGAG
GCTTACGTAGACATTGAGGCGCTTGCTGAGGATGTGGCCAACGTCTACAGCTCATTAAATAATTACAAATATTCCACATA
A

Upstream 100 bases:

>100_bases
GAAAAGTAAATTATTGATACAAACTTCTTTGCAAAGATTGGTAACTTTCTGTAAAATGTTCTCATAGCGATAGAGGCAGT
AAAGTGTGGGAGGTTTGACA

Downstream 100 bases:

>100_bases
TTCTTGGAAAAAGCAATAAAATTAAGTAAACTAACAGGAAAGGAGGTTCTTTAAATGAAAAAACTTATTGTAACTGCTTT
CCTTACTGCATCGCTTGGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MKAAASVNVANLINQWYVHIKKRDVSNAVELRDRIKGLLNVMEEDQDVLLYFNLLDYRFRVLMEDVAGEPQLPPIAEDKA
KTDGLLRYYYFLFKGMYESARSNYSKALNCFRVAERQLDNVEDEIEKAEFHYKLGNLYYFTKTTLLSFHHLSIAKSIYRA
YEEYKTQSINCTVLLALNYIDDGRLTRAENMLKSCAERLIKMGDNHLLAAVYYDLGFLKIQEDKHEEALEYFDLSFKTDD
IEKNAPIMYMQCIYESARSTYKIGEVDKALKWVHLGFEFAQKTDNINFSLKFSILNICYSAPIEGVPQVKEFIEMLEERE
AYVDIEALAEDVANVYSSLNNYKYST

Sequences:

>Translated_346_residues
MKAAASVNVANLINQWYVHIKKRDVSNAVELRDRIKGLLNVMEEDQDVLLYFNLLDYRFRVLMEDVAGEPQLPPIAEDKA
KTDGLLRYYYFLFKGMYESARSNYSKALNCFRVAERQLDNVEDEIEKAEFHYKLGNLYYFTKTTLLSFHHLSIAKSIYRA
YEEYKTQSINCTVLLALNYIDDGRLTRAENMLKSCAERLIKMGDNHLLAAVYYDLGFLKIQEDKHEEALEYFDLSFKTDD
IEKNAPIMYMQCIYESARSTYKIGEVDKALKWVHLGFEFAQKTDNINFSLKFSILNICYSAPIEGVPQVKEFIEMLEERE
AYVDIEALAEDVANVYSSLNNYKYST
>Mature_346_residues
MKAAASVNVANLINQWYVHIKKRDVSNAVELRDRIKGLLNVMEEDQDVLLYFNLLDYRFRVLMEDVAGEPQLPPIAEDKA
KTDGLLRYYYFLFKGMYESARSNYSKALNCFRVAERQLDNVEDEIEKAEFHYKLGNLYYFTKTTLLSFHHLSIAKSIYRA
YEEYKTQSINCTVLLALNYIDDGRLTRAENMLKSCAERLIKMGDNHLLAAVYYDLGFLKIQEDKHEEALEYFDLSFKTDD
IEKNAPIMYMQCIYESARSTYKIGEVDKALKWVHLGFEFAQKTDNINFSLKFSILNICYSAPIEGVPQVKEFIEMLEERE
AYVDIEALAEDVANVYSSLNNYKYST

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40343; Mature: 40343

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAAASVNVANLINQWYVHIKKRDVSNAVELRDRIKGLLNVMEEDQDVLLYFNLLDYRFR
CCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHH
VLMEDVAGEPQLPPIAEDKAKTDGLLRYYYFLFKGMYESARSNYSKALNCFRVAERQLDN
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VEDEIEKAEFHYKLGNLYYFTKTTLLSFHHLSIAKSIYRAYEEYKTQSINCTVLLALNYI
HHHHHHHHHHHEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC
DDGRLTRAENMLKSCAERLIKMGDNHLLAAVYYDLGFLKIQEDKHEEALEYFDLSFKTDD
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCEEEEECCHHHHHHHHHCCCCCCCC
IEKNAPIMYMQCIYESARSTYKIGEVDKALKWVHLGFEFAQKTDNINFSLKFSILNICYS
CCCCCCCHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHH
APIEGVPQVKEFIEMLEEREAYVDIEALAEDVANVYSSLNNYKYST
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKAAASVNVANLINQWYVHIKKRDVSNAVELRDRIKGLLNVMEEDQDVLLYFNLLDYRFR
CCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHH
VLMEDVAGEPQLPPIAEDKAKTDGLLRYYYFLFKGMYESARSNYSKALNCFRVAERQLDN
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VEDEIEKAEFHYKLGNLYYFTKTTLLSFHHLSIAKSIYRAYEEYKTQSINCTVLLALNYI
HHHHHHHHHHHEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC
DDGRLTRAENMLKSCAERLIKMGDNHLLAAVYYDLGFLKIQEDKHEEALEYFDLSFKTDD
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCEEEEECCHHHHHHHHHCCCCCCCC
IEKNAPIMYMQCIYESARSTYKIGEVDKALKWVHLGFEFAQKTDNINFSLKFSILNICYS
CCCCCCCHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHH
APIEGVPQVKEFIEMLEEREAYVDIEALAEDVANVYSSLNNYKYST
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]