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The map label for this gene is yfkH [H]

Identifier: 52784619

GI number: 52784619

Start: 839955

End: 840770

Strand: Direct

Name: yfkH [H]

Synonym: BLi00820

Alternate gene names: 52784619

Gene position: 839955-840770 (Clockwise)

Preceding gene: 52784618

Following gene: 52784621

Centisome position: 19.89

GC content: 49.02

Gene sequence:

>816_bases
ATGAGTTTTTTGAAAGAGCTGGGCTGGCGTTTTTTCCTTCATGAAGGACCGAGCAAATCGGCGGAACTTGCCTACTTTTT
TCTATTGTCTCTGTTTCCGTTTATGATTTTCCTATTGACATTGATCGGCTACCTGCCTGTCAAAACGGGCGATGTCATCG
GGCTGATCGAACAGTATGCCCCAGAAGACACGATGTCCGTCATTGAAGAGACCCTGAATACCGGAAACAGGGGCCTGCTT
TCTTTCGGGATCATTGCGGCGCTCTGGTCTGCATCAAACGGATTGAACGCGATTGTCAGGGCCTTTAACCATGCTTATGA
AGTAGAGGAAAACCGCTCTTTTATCATGGTTCGGCTGACATCGCTCCTTTTGACCGCCGCGATGGTTTTCACAATATTGG
TCGCGCTTCTTCTGCCTGTATTCGGGAGGGCCATCGGCCATTTTATCGCCAATCTGGACGGTACGCCGGAGATGTTTCTG
ACGGCATGGTCAGCGCTTCGCTGGGGAATCAGCCCGCTTGTGCTGCTGATCGTCTTTACGGCTTTGTACTTTTTTGCTCC
GAATAAACGGCTGTCATTTAAATTCGTGCTTCCGGGAGCTGTTGCAGCGACCGCCGGCTGGATCCTCGTCAGCGTCCTGT
TCTCATACTATGTCAGCGAATTTGCAAACTACAGTGCGACATACGGAAGCCTCGGCGGCATCATCGTCCTGATGATCTGG
TTTTATTTAAGCGGAATGATGATTATTCTTGGAGGGGAAATCAATGCCCTTTTACATAAGCGTAAAATCATTCCTGAAGA
AAATCCGCGGAATTGA

Upstream 100 bases:

>100_bases
AAGAGCTGAAGGAAACGACGCCAAAAGTGATCGGCCTGATTGAGGAAACGAGGGATCACTTCACAGCCAAATCCAAAGGA
CGTACGGAGCCGGAAAAAGA

Downstream 100 bases:

>100_bases
GCAATCTATAATAGAACAATTCATGAGTTCAAAAGCGGAGGGATCATCATGGCAAAACACACGAAAAAAGGCGGCAGCCA
TAATAAACAAAATTCAAAGC

Product: YfkH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MSFLKELGWRFFLHEGPSKSAELAYFFLLSLFPFMIFLLTLIGYLPVKTGDVIGLIEQYAPEDTMSVIEETLNTGNRGLL
SFGIIAALWSASNGLNAIVRAFNHAYEVEENRSFIMVRLTSLLLTAAMVFTILVALLLPVFGRAIGHFIANLDGTPEMFL
TAWSALRWGISPLVLLIVFTALYFFAPNKRLSFKFVLPGAVAATAGWILVSVLFSYYVSEFANYSATYGSLGGIIVLMIW
FYLSGMMIILGGEINALLHKRKIIPEENPRN

Sequences:

>Translated_271_residues
MSFLKELGWRFFLHEGPSKSAELAYFFLLSLFPFMIFLLTLIGYLPVKTGDVIGLIEQYAPEDTMSVIEETLNTGNRGLL
SFGIIAALWSASNGLNAIVRAFNHAYEVEENRSFIMVRLTSLLLTAAMVFTILVALLLPVFGRAIGHFIANLDGTPEMFL
TAWSALRWGISPLVLLIVFTALYFFAPNKRLSFKFVLPGAVAATAGWILVSVLFSYYVSEFANYSATYGSLGGIIVLMIW
FYLSGMMIILGGEINALLHKRKIIPEENPRN
>Mature_270_residues
SFLKELGWRFFLHEGPSKSAELAYFFLLSLFPFMIFLLTLIGYLPVKTGDVIGLIEQYAPEDTMSVIEETLNTGNRGLLS
FGIIAALWSASNGLNAIVRAFNHAYEVEENRSFIMVRLTSLLLTAAMVFTILVALLLPVFGRAIGHFIANLDGTPEMFLT
AWSALRWGISPLVLLIVFTALYFFAPNKRLSFKFVLPGAVAATAGWILVSVLFSYYVSEFANYSATYGSLGGIIVLMIWF
YLSGMMIILGGEINALLHKRKIIPEENPRN

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 30173; Mature: 30042

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFLKELGWRFFLHEGPSKSAELAYFFLLSLFPFMIFLLTLIGYLPVKTGDVIGLIEQYA
CCHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
PEDTMSVIEETLNTGNRGLLSFGIIAALWSASNGLNAIVRAFNHAYEVEENRSFIMVRLT
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
SLLLTAAMVFTILVALLLPVFGRAIGHFIANLDGTPEMFLTAWSALRWGISPLVLLIVFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALYFFAPNKRLSFKFVLPGAVAATAGWILVSVLFSYYVSEFANYSATYGSLGGIIVLMIW
HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
FYLSGMMIILGGEINALLHKRKIIPEENPRN
HHHCCEEEEECCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SFLKELGWRFFLHEGPSKSAELAYFFLLSLFPFMIFLLTLIGYLPVKTGDVIGLIEQYA
CHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
PEDTMSVIEETLNTGNRGLLSFGIIAALWSASNGLNAIVRAFNHAYEVEENRSFIMVRLT
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
SLLLTAAMVFTILVALLLPVFGRAIGHFIANLDGTPEMFLTAWSALRWGISPLVLLIVFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALYFFAPNKRLSFKFVLPGAVAATAGWILVSVLFSYYVSEFANYSATYGSLGGIIVLMIW
HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
FYLSGMMIILGGEINALLHKRKIIPEENPRN
HHHCCEEEEECCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]