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The map label for this gene is yfkM [H]

Identifier: 52784614

GI number: 52784614

Start: 836713

End: 837228

Strand: Direct

Name: yfkM [H]

Synonym: BLi00815

Alternate gene names: 52784614

Gene position: 836713-837228 (Clockwise)

Preceding gene: 52784612

Following gene: 52784617

Centisome position: 19.81

GC content: 50.19

Gene sequence:

>516_bases
ATGAGCAAAAAAATTGCAGTTGTTCTGACAGATTACTTTGAGGATTCGGAGTATACCGAGCCTGCGAAAGCGTTCAAAGA
CGCCGGACACCAGCTTACGGTTATTGAAAAAGAAAAAGGCAAAACGCTGAAAGGCAAACAAGGCGAGGCGCAAGTGGAAA
CAGATGCGTCCATTGACGAAGTCAGCCCGGCTGATTTTGACGCATTGTTGATTCCGGGCGGATTTTCGCCGGATATTCTT
AGAGCCGACCAGCGTTTCGTATCGTTTGCAAAATCCTTTATGGATGACAAAAAACCGGTGTTTGCGATCTGCCACGGCCC
GCAGCTTTTAATCACCGCCAAGGCTCTGGACGGTCGCGGTGCGACAGGCTACACATCGATTCAAGTCGATTTGGAAAACG
CCGGGGTCAAATTTAAGGACGAGGAAGTTGTCGTCTGCCAGAACCAGCTTGTCACAAGCCGGACGCCTGACGACATCCCT
GCGTTTACACGAGAATCTTTGAAGCTGCTCGGCTGA

Upstream 100 bases:

>100_bases
TGACTTAGGTACTTTGTCGCGAGGGCGTGGGGATGTTTTATTTAGTGTGGCAGGGGTAAATAGATTTATGTAGACAGAAG
CTTCTGGGAGGGTGATCAAT

Downstream 100 bases:

>100_bases
TGAAAAAAGACCGGAATAGATTTCCGGTCTTTTTTTATGTTTATTTTCGGAGTGCGGCCAGTTCCTCTGCGATTGCCTGC
ATTTCGCTCGGACTGAAAGA

Product: YfkM

Products: NA

Alternate protein names: GSP18 [H]

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSKKIAVVLTDYFEDSEYTEPAKAFKDAGHQLTVIEKEKGKTLKGKQGEAQVETDASIDEVSPADFDALLIPGGFSPDIL
RADQRFVSFAKSFMDDKKPVFAICHGPQLLITAKALDGRGATGYTSIQVDLENAGVKFKDEEVVVCQNQLVTSRTPDDIP
AFTRESLKLLG

Sequences:

>Translated_171_residues
MSKKIAVVLTDYFEDSEYTEPAKAFKDAGHQLTVIEKEKGKTLKGKQGEAQVETDASIDEVSPADFDALLIPGGFSPDIL
RADQRFVSFAKSFMDDKKPVFAICHGPQLLITAKALDGRGATGYTSIQVDLENAGVKFKDEEVVVCQNQLVTSRTPDDIP
AFTRESLKLLG
>Mature_170_residues
SKKIAVVLTDYFEDSEYTEPAKAFKDAGHQLTVIEKEKGKTLKGKQGEAQVETDASIDEVSPADFDALLIPGGFSPDILR
ADQRFVSFAKSFMDDKKPVFAICHGPQLLITAKALDGRGATGYTSIQVDLENAGVKFKDEEVVVCQNQLVTSRTPDDIPA
FTRESLKLLG

Specific function: Functions in the protection against aldehyde-stress, possibly by degrading damaged proteins [H]

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PfpI endopeptidase domain [H]

Homologues:

Organism=Escherichia coli, GI87082219, Length=171, Percent_Identity=63.7426900584795, Blast_Score=231, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006286
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI [H]

EC number: NA

Molecular weight: Translated: 18671; Mature: 18540

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKIAVVLTDYFEDSEYTEPAKAFKDAGHQLTVIEKEKGKTLKGKQGEAQVETDASIDE
CCCEEEEEEEECCCCCCCCCHHHHHHHCCCEEEEEECCCCCEECCCCCCCEEECCCCCCC
VSPADFDALLIPGGFSPDILRADQRFVSFAKSFMDDKKPVFAICHGPQLLITAKALDGRG
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEECCCCC
ATGYTSIQVDLENAGVKFKDEEVVVCQNQLVTSRTPDDIPAFTRESLKLLG
CCCEEEEEEEECCCCCEECCCEEEEECCCEECCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SKKIAVVLTDYFEDSEYTEPAKAFKDAGHQLTVIEKEKGKTLKGKQGEAQVETDASIDE
CCEEEEEEEECCCCCCCCCHHHHHHHCCCEEEEEECCCCCEECCCCCCCEEECCCCCCC
VSPADFDALLIPGGFSPDILRADQRFVSFAKSFMDDKKPVFAICHGPQLLITAKALDGRG
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEECCCCC
ATGYTSIQVDLENAGVKFKDEEVVVCQNQLVTSRTPDDIPAFTRESLKLLG
CCCEEEEEEEECCCCCEECCCEEEEECCCEECCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377; 9298659 [H]