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The map label for this gene is yvbA [H]

Identifier: 52784586

GI number: 52784586

Start: 799128

End: 799412

Strand: Reverse

Name: yvbA [H]

Synonym: BLi00787

Alternate gene names: 52784586

Gene position: 799412-799128 (Counterclockwise)

Preceding gene: 52784587

Following gene: 52784585

Centisome position: 18.93

GC content: 38.6

Gene sequence:

>285_bases
ATGAATCAAACCTTTAAAGCTCTAGCTGATCCGACGAGAAGAAAGATTTTGAACCTGCTGAAGGACCGGGATATGACCGC
CGGTGAAATTTCCGACCAGTTTCAAATGTCTAAACCAAGTATTTCTCAGCATTTAAAAATTTTAAAACAGGCTGAATTAA
TTCAGGATGAAAAAAAAGGCCAATACATCATCTACTCGCTAAACACTACAATGTTTCAAGAAATCATCGGCTGGGCTTTC
AGTTTTACTGAACAAGCCGGCAAAGATAAAGGGGATGCAAAATGA

Upstream 100 bases:

>100_bases
CGCCGGAGATGGCGGATTTTTTTAATAAATCTTGACTAAATTTTTCTTTTATTTTAGTATTTAGTTAAATAACTAAATAC
TTATTCTAAGGATGCTAAAT

Downstream 100 bases:

>100_bases
GAAAACACATTTTTTCGCTCGCTATAATCGCTATGAATCTAATCATGTGGGCAATCGCTTATCCGCACATTTCCGGTCAA
GTTCCAATCCATTGGTCATC

Product: YvbA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MNQTFKALADPTRRKILNLLKDRDMTAGEISDQFQMSKPSISQHLKILKQAELIQDEKKGQYIIYSLNTTMFQEIIGWAF
SFTEQAGKDKGDAK

Sequences:

>Translated_94_residues
MNQTFKALADPTRRKILNLLKDRDMTAGEISDQFQMSKPSISQHLKILKQAELIQDEKKGQYIIYSLNTTMFQEIIGWAF
SFTEQAGKDKGDAK
>Mature_94_residues
MNQTFKALADPTRRKILNLLKDRDMTAGEISDQFQMSKPSISQHLKILKQAELIQDEKKGQYIIYSLNTTMFQEIIGWAF
SFTEQAGKDKGDAK

Specific function: Represses the transcription of the sdpIR operon and of several other operons that probably contribute to delaying commitment to sporulation [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 10784; Mature: 10784

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQTFKALADPTRRKILNLLKDRDMTAGEISDQFQMSKPSISQHLKILKQAELIQDEKKG
CCCCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
QYIIYSLNTTMFQEIIGWAFSFTEQAGKDKGDAK
CEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNQTFKALADPTRRKILNLLKDRDMTAGEISDQFQMSKPSISQHLKILKQAELIQDEKKG
CCCCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
QYIIYSLNTTMFQEIIGWAFSFTEQAGKDKGDAK
CEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]