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The map label for this gene is ctc

Identifier: 52783909

GI number: 52783909

Start: 63316

End: 63942

Strand: Direct

Name: ctc

Synonym: BLi00065

Alternate gene names: 52783909

Gene position: 63316-63942 (Clockwise)

Preceding gene: 52783908

Following gene: 52783910

Centisome position: 1.5

GC content: 45.3

Gene sequence:

>627_bases
ATGGCAATTTTAAAAGCGGAAGAAAGAACGGATTCCAGACGGTCTTCTTTAAGAAGAATTCGGCAATCCGGGTATGTGCC
GGGTGTCATTTACGGAAGAAATCTGGAGAACAAATCCGTTGCGTTAGACAGTATCGAGCTTTTAAAAATCTTGCGCGCTG
AGGGCAAAAATACGATTATCAACTTGGATATAAACGGTGACCAACACTCTGTTATGGTGACTGAGCTGCAGACGGATCCG
TTAAAAGATTCAATCGTACATGCCGATTTTAAAGTGGTTGATATGGAAGCGGAAATGGAGGCGACGGTTCCTGTAAACCT
TACGGGTGAAGCAGAGGGCATCAAACAGGGCGGTGTTCTTCAGCAGCCGCTTTACGAGCTGTCTGTCACAGCAAAGCCGA
AGAACATTCCGCAGACGATCGAGGTTGATATTTCCAGTCTCGAAGTCAATGATGTTCTAACCGTCGGCGATATTCCGACC
AAAGGCGATTATTCATACAACCATGAGCCTGATGAAGTTGTTGCATCCATTCTTCCTCCTCAAAAGCAGGAAGAAACAGA
AGCCGAATCAGCTGCTCAAGACGTTGAGGAACCAGAAAAAGGCACTGAAGAGGAAAAAGAAGAATAA

Upstream 100 bases:

>100_bases
TCAGCTTCCTGTTCGATTAATTTGCTGATTCTGGTTTAAAGTTTTGTCGTTATGGGAATGGTTTTAGAAAGACCAATCTA
ACGATAGGATGGTGCTGAAA

Downstream 100 bases:

>100_bases
ATACGTAAGACGTAATCCGCCCGCGGTTACGTCTTTTGTGCTAGAATGAGGGGAAATTAGGATGCTCCCCCTCAGTATGC
TGAGGCAGGGTTTTGCTTAA

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MAILKAEERTDSRRSSLRRIRQSGYVPGVIYGRNLENKSVALDSIELLKILRAEGKNTIINLDINGDQHSVMVTELQTDP
LKDSIVHADFKVVDMEAEMEATVPVNLTGEAEGIKQGGVLQQPLYELSVTAKPKNIPQTIEVDISSLEVNDVLTVGDIPT
KGDYSYNHEPDEVVASILPPQKQEETEAESAAQDVEEPEKGTEEEKEE

Sequences:

>Translated_208_residues
MAILKAEERTDSRRSSLRRIRQSGYVPGVIYGRNLENKSVALDSIELLKILRAEGKNTIINLDINGDQHSVMVTELQTDP
LKDSIVHADFKVVDMEAEMEATVPVNLTGEAEGIKQGGVLQQPLYELSVTAKPKNIPQTIEVDISSLEVNDVLTVGDIPT
KGDYSYNHEPDEVVASILPPQKQEETEAESAAQDVEEPEKGTEEEKEE
>Mature_207_residues
AILKAEERTDSRRSSLRRIRQSGYVPGVIYGRNLENKSVALDSIELLKILRAEGKNTIINLDINGDQHSVMVTELQTDPL
KDSIVHADFKVVDMEAEMEATVPVNLTGEAEGIKQGGVLQQPLYELSVTAKPKNIPQTIEVDISSLEVNDVLTVGDIPTK
GDYSYNHEPDEVVASILPPQKQEETEAESAAQDVEEPEKGTEEEKEE

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_BACLD (Q65PG9)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_077338.1
- RefSeq:   YP_089738.1
- ProteinModelPortal:   Q65PG9
- SMR:   Q65PG9
- STRING:   Q65PG9
- EnsemblBacteria:   EBBACT00000056004
- EnsemblBacteria:   EBBACT00000061598
- GeneID:   3028887
- GeneID:   3101420
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi00065
- KEGG:   bli:BL00518
- NMPDR:   fig|279010.5.peg.1346
- eggNOG:   COG1825
- GeneTree:   EBGT00050000002196
- HOGENOM:   HBG731986
- OMA:   TDNTVLI
- ProtClustDB:   PRK05618
- BioCyc:   BLIC279010-1:BLI00065-MONOMER
- BioCyc:   BLIC279010:BL00518-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 22982; Mature: 22851

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILKAEERTDSRRSSLRRIRQSGYVPGVIYGRNLENKSVALDSIELLKILRAEGKNTII
CCEECCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEHHHHHHHHHHHCCCCCEEE
NLDINGDQHSVMVTELQTDPLKDSIVHADFKVVDMEAEMEATVPVNLTGEAEGIKQGGVL
EEEECCCCCEEEEEEECCCCCCHHEEECCEEEEEECCCCEEEEEEEECCCCCCCCCCCCC
QQPLYELSVTAKPKNIPQTIEVDISSLEVNDVLTVGDIPTKGDYSYNHEPDEVVASILPP
CCCHHHEEEECCCCCCCCEEEEEEEEEEECCEEEECCCCCCCCCCCCCCHHHHHHHHCCC
QKQEETEAESAAQDVEEPEKGTEEEKEE
CCCHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AILKAEERTDSRRSSLRRIRQSGYVPGVIYGRNLENKSVALDSIELLKILRAEGKNTII
CEECCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEHHHHHHHHHHHCCCCCEEE
NLDINGDQHSVMVTELQTDPLKDSIVHADFKVVDMEAEMEATVPVNLTGEAEGIKQGGVL
EEEECCCCCEEEEEEECCCCCCHHEEECCEEEEEECCCCEEEEEEEECCCCCCCCCCCCC
QQPLYELSVTAKPKNIPQTIEVDISSLEVNDVLTVGDIPTKGDYSYNHEPDEVVASILPP
CCCHHHEEEECCCCCCCCEEEEEEEEEEECCEEEECCCCCCCCCCCCCCHHHHHHHHCCC
QKQEETEAESAAQDVEEPEKGTEEEKEE
CCCHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA