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The map label for this gene is yaaD [H]

Identifier: 52783866

GI number: 52783866

Start: 19017

End: 19901

Strand: Direct

Name: yaaD [H]

Synonym: BLi00016

Alternate gene names: 52783866

Gene position: 19017-19901 (Clockwise)

Preceding gene: 52783865

Following gene: 52783867

Centisome position: 0.45

GC content: 50.51

Gene sequence:

>885_bases
ATGGCTCAAACAGGTACTGATCGCGTAAAACGCGGTATGGCAGAAATGCAGAAGGGCGGCGTCATTATGGACGTTGTCAA
TGCTGAACAAGCAAAAATCGCAGAAGAAGCAGGAGCCGTCGCAGTCATGGCGCTGGAGCGCGTTCCGGCTGATATCCGTG
CGGCAGGCGGAGTTGCCCGCATGGCAGATCCGACTATTGTCGAAGAAGTGATGAACGCTGTTTCAATCCCGGTTATGGCA
AAAGCACGCATCGGGCATATCGTTGAAGCGCGTGTTCTTGAAGCGCTTGGCGTTGACTATATTGATGAAAGTGAAGTTTT
GACTCCTGCAGATGAAGAATTTCATTTAAATAAAAACGAATTTACCGTTCCATTTGTATGCGGATGCCGCGACCTAGGAG
AAGCGACGCGCCGGATCGCTGAAGGAGCTTCAATGCTTCGTACAAAAGGCGAACCTGGTACGGGCAATATTGTGGAAGCT
GTCCGCCATATGAGAAAGGTGAATGCTCAAGTGCGCAAAGTAGTCGGCATGAGCGATGACGAACTGATGACAGAAGCGAA
AAACCTCGGCGCTCCTTATGAGCTGCTGAAGGAAATTAAAGCCGAAGGACGCCTTCCGGTTGTCAACTTTGCTGCCGGCG
GTGTAGCAACACCTGCTGATGCTGCTCTAATGATGCAGCTTGGCGCTGACGGCGTATTCGTAGGGTCCGGTATTTTCAAA
TCCGACAACCCTGCAAAATTCGCGAAAGCAATCGTAGAAGCGACGACGCATTTCACGGATTACAAGCTGATTGCCGAGCT
TTCAAAAGAGCTTGGAACTGCGATGAAAGGGATTGAAATCTCAAATCTGCTGCCAGAACAGCGTATGCAAGAGCGCGGCT
GGTAA

Upstream 100 bases:

>100_bases
ATAGAAATAATCTTCGTGTTTTTCATATGATTTTGTGGAATTATAGGATACAATAGGATTAAATCTGACAATTCAATCTT
TGATTAGGGGGATCCTTGAA

Downstream 100 bases:

>100_bases
ACACGAAGGAGACGGATTGACATGCTGACAATTGGTGTACTTGGACTTCAGGGAGCAGTAAGAGAACACATTCGCTCAAT
TGAAGCATGCGGAGCGGCCG

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MAQTGTDRVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMA
KARIGHIVEARVLEALGVDYIDESEVLTPADEEFHLNKNEFTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEA
VRHMRKVNAQVRKVVGMSDDELMTEAKNLGAPYELLKEIKAEGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK
SDNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQRMQERGW

Sequences:

>Translated_294_residues
MAQTGTDRVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMA
KARIGHIVEARVLEALGVDYIDESEVLTPADEEFHLNKNEFTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEA
VRHMRKVNAQVRKVVGMSDDELMTEAKNLGAPYELLKEIKAEGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK
SDNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQRMQERGW
>Mature_293_residues
AQTGTDRVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAK
ARIGHIVEARVLEALGVDYIDESEVLTPADEEFHLNKNEFTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAV
RHMRKVNAQVRKVVGMSDDELMTEAKNLGAPYELLKEIKAEGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS
DNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQRMQERGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=296, Percent_Identity=58.7837837837838, Blast_Score=358, Evalue=1e-100,
Organism=Saccharomyces cerevisiae, GI6323996, Length=294, Percent_Identity=59.1836734693878, Blast_Score=346, Evalue=3e-96,
Organism=Saccharomyces cerevisiae, GI6321049, Length=294, Percent_Identity=59.1836734693878, Blast_Score=345, Evalue=4e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 31523; Mature: 31392

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQTGTDRVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVAR
CCCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCHHHHHHHHCCHHHHHCCCCHH
MADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEALGVDYIDESEVLTPADEEFHLNKNE
HCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCC
FTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVGMSDD
EEEEHEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
ELMTEAKNLGAPYELLKEIKAEGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK
HHHHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCC
SDNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQRMQERGW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCCC
>Mature Secondary Structure 
AQTGTDRVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVAR
CCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCHHHHHHHHCCHHHHHCCCCHH
MADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEALGVDYIDESEVLTPADEEFHLNKNE
HCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCC
FTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVGMSDD
EEEEHEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
ELMTEAKNLGAPYELLKEIKAEGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK
HHHHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCC
SDNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQRMQERGW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA