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The map label for this gene is atoC [C]

Identifier: 52142679

GI number: 52142679

Start: 2684785

End: 2686446

Strand: Direct

Name: atoC [C]

Synonym: BCZK2561

Alternate gene names: 52142679

Gene position: 2684785-2686446 (Clockwise)

Preceding gene: 52142691

Following gene: 52142678

Centisome position: 50.65

GC content: 36.88

Gene sequence:

>1662_bases
ATGGCATTCTCATTTCCCACAATAAAAGAATTTCTAAAAACATTATCTATTGATCATACATATAGCACTCAACACATTGA
AAAAGTTGGCGAAAAATTTTATTATCGACCTTCTACTATAGAAGAATATAATTGTGCAGTAATATATGAAGATGAGTCGT
TCACCACTTTAATTAACGGGTTTTCCAATGAACTAGCTGTTATCATAATGAACCGAAATAAAGAGCCTATATGCTGTATA
ACGGCACAGCAAATCATTCCGTTTCTTGTTAAGTCTTACAATGAACTCCAATCTTTTTATAACACCGTAATACAAACTAC
TGATTCTTCTGTTACAGTCATCGATGATAAAGAATGCGTTCGCACCTGGACAGATGGCGCCGAAAAGATTTTTTCAGTCA
AGCATAATGAAATTATCGGGCAACCTATCACCCGCTTTTTTGACTATAAAGATTTGGAAATTTTGCAATCATTACATGAC
GGAAAAAGCATAATCGCTCAGTTCCATCAACCTCGGCCTGATCTGTTCGTATTAATTAATTCAAACCCAGTTTATTGTAA
CGATGAAATTATAGGAGCAGTTGTCTCTGAAACTGATGTTACGAATCAAGTCGCTTTAAATGAAAAACTATTTAATATGT
CACATGAAATGCACCGTTTAGAACAAGAGGTCGCAAAGTATAAAGATGAATCAGACCCTTTCCTTGCGATGAATGGAAAG
AGCCCCGTTATACAAAGAACGATACAATTAGCTAGAAAGGTTTGTTCGGTGAAATCAACTGTTTTAATACTCGGCGAAAG
TGGTGTTGGAAAAGAAGTATTTGCGAAAGCGATTCATGATGCAAGTGAAGCAGCTAAAGCTCCGTTCATTTCAATTAACT
GCGGCGCAATTCCAGAAGCATTATTTGAAAGTGAGTTATTCGGCTATGAGCGCGGGGCGTTTTCTGGTGCAAATAGTAAA
GGGAAAAAGGGTAAAATAGAGCTCGCGCAAGGCGGCACATTATTCCTTGATGAAATAGGCGAAATGCCGCTCGATATGCA
AGTAAAACTTTTACGTGTACTACAAGAAAGAAAATATTACCGAGTTGGTGGAGAAAAAGAGATTCATATTGATTTCCGTA
TTATCGCTGCTACAAATCGTGATTTACAAGAAGAAATGAAAAAAGGCACGTTCCGAGAAGACTTGTACTATCGCCTAAAT
GTCGTGAGCTTACATATTCCACCACTGCGCGAAAGACGCGAAGATATTATTGAATTAACCTACTCTTTTTTAAACGATTT
TTCAATCAACTATAACAGACCCATTCGCGACTTACCGTCCAGCATTATGCATGAACTGCTTCATTACAATTGGCCAGGTA
ATATTCGCGAGCTCCGTAACGTTGTTGAAAGACTTGTCGTATTTGCGACTGACGGTATTATAAAACAAGAATATTTACCA
TTTCATACAACTGAAACTTTAGACGAACATTCGGCTCATTCCCTATTACTCAGCAACAATAATACAATCCTCTCTTTACA
AGAAGAGATGGAGGAACATGAGAAAAAAGTCATTGAGAGGGCTTTACGTATTTTGAATGGGAATAAATTAGAATGTGCGA
AACAGCTTGGTGTTACGAGGGCTACTTTATATAACCGTTTAAAAAAACTTGGATTACAATAA

Upstream 100 bases:

>100_bases
AAATAATATTTTTATTTGTAAAAATATTTTAAATTTATCGCAAATAAGTGTATTATTTTTTTATCACTGTCAAAATTTTT
ATACATAACAGGAGGACAAT

Downstream 100 bases:

>100_bases
ACCTTCCCTCCTCTATATTGGCATAGTTTTTGCATTATATAATTTGTGCAAACCGAACTAGAGGAGGGATACATATGACG
AATAAAGACCACTTAATTGT

Product: sigma-54-dependent transcriptional activator

Products: NA

Alternate protein names: (S)-limonene 6-monooxygenase; (S)-limonene 7-monooxygenase; Carveol dehydrogenase; Perillyl-alcohol dehydrogenase [H]

Number of amino acids: Translated: 553; Mature: 552

Protein sequence:

>553_residues
MAFSFPTIKEFLKTLSIDHTYSTQHIEKVGEKFYYRPSTIEEYNCAVIYEDESFTTLINGFSNELAVIIMNRNKEPICCI
TAQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKECVRTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHD
GKSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNGK
SPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSK
GKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLN
VVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLP
FHTTETLDEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLGLQ

Sequences:

>Translated_553_residues
MAFSFPTIKEFLKTLSIDHTYSTQHIEKVGEKFYYRPSTIEEYNCAVIYEDESFTTLINGFSNELAVIIMNRNKEPICCI
TAQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKECVRTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHD
GKSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNGK
SPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSK
GKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLN
VVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLP
FHTTETLDEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLGLQ
>Mature_552_residues
AFSFPTIKEFLKTLSIDHTYSTQHIEKVGEKFYYRPSTIEEYNCAVIYEDESFTTLINGFSNELAVIIMNRNKEPICCIT
AQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKECVRTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHDG
KSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNGKS
PVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKG
KKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLNV
VSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLPF
HTTETLDEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLGLQ

Specific function: Involved in limonene hydroxylation to a mixture of carveol and perillyl alcohol as well as in dehydrogenation of these products to carvone and perillyl aldehyde. Aromatic alcohols containing an isopropyl or isopropenyl group at ring position 4 also served

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=313, Percent_Identity=47.9233226837061, Blast_Score=280, Evalue=1e-76,
Organism=Escherichia coli, GI1790437, Length=314, Percent_Identity=46.1783439490446, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI1790299, Length=421, Percent_Identity=38.479809976247, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI1789233, Length=472, Percent_Identity=36.4406779661017, Blast_Score=261, Evalue=1e-70,
Organism=Escherichia coli, GI87082117, Length=317, Percent_Identity=43.8485804416404, Blast_Score=256, Evalue=2e-69,
Organism=Escherichia coli, GI1788905, Length=314, Percent_Identity=44.2675159235669, Blast_Score=256, Evalue=4e-69,
Organism=Escherichia coli, GI1786524, Length=330, Percent_Identity=42.7272727272727, Blast_Score=252, Evalue=3e-68,
Organism=Escherichia coli, GI1789087, Length=349, Percent_Identity=40.4011461318052, Blast_Score=245, Evalue=6e-66,
Organism=Escherichia coli, GI87082152, Length=335, Percent_Identity=40, Blast_Score=221, Evalue=8e-59,
Organism=Escherichia coli, GI1787583, Length=382, Percent_Identity=35.6020942408377, Blast_Score=218, Evalue=9e-58,
Organism=Escherichia coli, GI87081872, Length=342, Percent_Identity=38.8888888888889, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI87081858, Length=456, Percent_Identity=27.4122807017544, Blast_Score=165, Evalue=6e-42,
Organism=Escherichia coli, GI1789828, Length=246, Percent_Identity=35.3658536585366, Blast_Score=149, Evalue=5e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: =1.14.13.48; =1.14.13.49; =1.1.1.243; =1.1.1.144 [H]

Molecular weight: Translated: 63350; Mature: 63219

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFSFPTIKEFLKTLSIDHTYSTQHIEKVGEKFYYRPSTIEEYNCAVIYEDESFTTLING
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHC
FSNELAVIIMNRNKEPICCITAQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKECV
CCCCEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
RTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHDGKSIIAQFHQPRPDLFVLIN
HHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCCEEEEEC
SNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNGK
CCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
SPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEA
CHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
LFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYY
HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEHHHHCCCCCCHHHHHHHHHHHCCCE
RVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLNVVSLHIPPLRERREDIIELT
ECCCCEEEEEEEEEEEECCCHHHHHHHCCCCHHHHEEEEEEEEEECCCHHHHHHHHHHHH
YSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLP
HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCC
FHTTETLDEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTR
CCCHHHHHCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHH
ATLYNRLKKLGLQ
HHHHHHHHHHCCC
>Mature Secondary Structure 
AFSFPTIKEFLKTLSIDHTYSTQHIEKVGEKFYYRPSTIEEYNCAVIYEDESFTTLING
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHC
FSNELAVIIMNRNKEPICCITAQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKECV
CCCCEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
RTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHDGKSIIAQFHQPRPDLFVLIN
HHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCCEEEEEC
SNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNGK
CCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
SPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEA
CHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
LFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYY
HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEHHHHCCCCCCHHHHHHHHHHHCCCE
RVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLNVVSLHIPPLRERREDIIELT
ECCCCEEEEEEEEEEEECCCHHHHHHHCCCCHHHHEEEEEEEEEECCCHHHHHHHHHHHH
YSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLP
HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCC
FHTTETLDEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTR
CCCHHHHHCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHH
ATLYNRLKKLGLQ
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA