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The map label for this gene is glnR

Identifier: 52141782

GI number: 52141782

Start: 3587672

End: 3588061

Strand: Reverse

Name: glnR

Synonym: BCZK3463

Alternate gene names: 52141782

Gene position: 3588061-3587672 (Counterclockwise)

Preceding gene: 52141783

Following gene: 52141784

Centisome position: 67.69

GC content: 33.85

Gene sequence:

>390_bases
ATGAAAGAAGATAGACGTTCTGCCCCGCTGTTTCCTATTGGTATTGTTATGGATTTAACACAATTATCTGCACGTCAAAT
TCGCTACTATGAAGAGCATAATCTTGTTTCTCCAACCCGTACAAAGGGGAATCGTAGATTATTTTCATTTAACGATGTAG
ATAAGTTGTTAGAGATTAAAGATTTATTAGATCAAGGCTTGAATATGGCTGGTATTAAACAAGTGTTACTAATGAAAGAA
AATCAAACAGAAGCAGTGAAAGTAAAAGAAGAAACGAAAGAAATTTCAAAAACTGAGCTTCGCAAAATACTTCGAGACGA
ACTACAACATACAGGTAGATTTAATCGAACTTCATTGCGACAAGGTGATATTTCAAGGTTTTTTCACTAA

Upstream 100 bases:

>100_bases
AATTTTTAAAAAATCATGTAAGAAAAGCTAACATCTATTGACACTAAACATAACATGGTATAAAATGAGAAGCAGTTAAG
GCGAAGGAGGAACTGAAACA

Downstream 100 bases:

>100_bases
AGAGAACTGATTCTGAAGGTGTTTAGAGGGACTAAGGAGGAATTTATAATGGCTAGGTACACAAAAGAAGATATTTTCCG
TTTGGCGAAAGAAGAGAATG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MKEDRRSAPLFPIGIVMDLTQLSARQIRYYEEHNLVSPTRTKGNRRLFSFNDVDKLLEIKDLLDQGLNMAGIKQVLLMKE
NQTEAVKVKEETKEISKTELRKILRDELQHTGRFNRTSLRQGDISRFFH

Sequences:

>Translated_129_residues
MKEDRRSAPLFPIGIVMDLTQLSARQIRYYEEHNLVSPTRTKGNRRLFSFNDVDKLLEIKDLLDQGLNMAGIKQVLLMKE
NQTEAVKVKEETKEISKTELRKILRDELQHTGRFNRTSLRQGDISRFFH
>Mature_129_residues
MKEDRRSAPLFPIGIVMDLTQLSARQIRYYEEHNLVSPTRTKGNRRLFSFNDVDKLLEIKDLLDQGLNMAGIKQVLLMKE
NQTEAVKVKEETKEISKTELRKILRDELQHTGRFNRTSLRQGDISRFFH

Specific function: Repressor for the glnRA operon. Binds specifically to the promoter region of the glnRA operon

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): GLNR_BACAN (P62172)

Other databases:

- EMBL:   AE016879
- EMBL:   AE017334
- EMBL:   AE017225
- RefSeq:   NP_846085.1
- RefSeq:   YP_020468.1
- RefSeq:   YP_029804.1
- ProteinModelPortal:   P62172
- SMR:   P62172
- EnsemblBacteria:   EBBACT00000012455
- EnsemblBacteria:   EBBACT00000017701
- EnsemblBacteria:   EBBACT00000020865
- GeneID:   1084985
- GeneID:   2815449
- GeneID:   2848381
- GenomeReviews:   AE016879_GR
- GenomeReviews:   AE017225_GR
- GenomeReviews:   AE017334_GR
- KEGG:   ban:BA_3834
- KEGG:   bar:GBAA_3834
- KEGG:   bat:BAS3550
- TIGR:   BA_3834
- TIGR:   GBAA_3834
- GeneTree:   EBGT00050000001525
- HOGENOM:   HBG710951
- OMA:   DLARFFH
- ProtClustDB:   CLSK887334
- BioCyc:   BANT260799:BAS3550-MONOMER
- BioCyc:   BANT261594:GBAA3834-MONOMER
- InterPro:   IPR009061
- InterPro:   IPR000551
- SMART:   SM00422

Pfam domain/function: PF00376 MerR; SSF46955 Putativ_DNA_bind

EC number: NA

Molecular weight: Translated: 15174; Mature: 15174

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS00552 HTH_MERR_1; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEDRRSAPLFPIGIVMDLTQLSARQIRYYEEHNLVSPTRTKGNRRLFSFNDVDKLLEIK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHHHHHHHHH
DLLDQGLNMAGIKQVLLMKENQTEAVKVKEETKEISKTELRKILRDELQHTGRFNRTSLR
HHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
QGDISRFFH
CCCHHHHCC
>Mature Secondary Structure
MKEDRRSAPLFPIGIVMDLTQLSARQIRYYEEHNLVSPTRTKGNRRLFSFNDVDKLLEIK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHHHHHHHHH
DLLDQGLNMAGIKQVLLMKENQTEAVKVKEETKEISKTELRKILRDELQHTGRFNRTSLR
HHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
QGDISRFFH
CCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629