Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

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The map label for this gene is 51893886

Identifier: 51893886

GI number: 51893886

Start: 2964845

End: 2965942

Strand: Reverse

Name: 51893886

Synonym: STH2748

Alternate gene names: NA

Gene position: 2965942-2964845 (Counterclockwise)

Preceding gene: 51893887

Following gene: 51893885

Centisome position: 83.17

GC content: 63.75

Gene sequence:

>1098_bases
TTGCTGGTCATCGGCCTGTTCGCCGCCGGTTGCGGTGGCTCCGGCCAGTCCCCGAACAACAACCAGGGCGGTACTCAGAC
TCCGTCCAACTCGCAGACCCAGACCCAGCAGCCGCAGACCCAGGAACCCCAGGAGGAGAAGCGGCTGGTCATCTACACCG
GTCGCGACCAGTCCATCATCGACCTGATGGTGGCCAAGTTTGAGGAGAAGTACCCGGAGTACAAGGGCAACGTCGAGGTC
CTGCCCATGGGCGCCCAGGAGATCATGGAGCGCGTCCGGGCGGAGAAGGCCAACCCGCAGGGCGACATCTGGTGGGGCGG
CACCCAGCAGGCGCTCTCCCTGGCCGTGAAGGAAGGCCTCCTGGCGAAGATCAACCCGGAGTTCGCTTCCAAGATCGCCG
ACGGTTACAAGGATCCTGAGGGTCACTGGTACGGCGAGATGCTCCTCCCCGAGGTCATCATGTACAACAAGGAGATGATC
TCCGAGAGCGAGCTGCCCAAGGACTGGGATGACCTGCTCGACGCCAAGTGGAAGGACCAGATCATCATCCGCGCCGTGCC
GGCTTCGGGCACCATGCGGACGATCTATGCCGCGATGATCGACCGGTTCCACCAGGAGGACGGCAAGCCTGACCGGGGTT
ACGAGTGGCTGCTGAAGCTGGACGCCAACACCAAGGAGTACGCGGCCAACCCCACCGACCTGTACCTGAAGATCTTCCGG
CAGGAAGGCAGCCTCAGCCTCTGGAACCTGCAGGACGTCCTGATCCAGGCGCAGGAGGGCATGCCCTTCGGTTACATCAT
CCCCGAGAGCGGCGTGCCGATCCTGGTGGACGGCGTGGGCATGATCGCCGGCGCCAAGCACCCGCAGGCGGCCGAGAAGT
TCCTGAACCTGCTCTTCAGCGACGAGGTGCAGGCGGAGCTGGCGGCCACCCGGTTCCAGATCCCGTCGATCAACCTGCCC
GAGTCCATGCAGCCCGAGTGGCTGAAGGAGCTGATGCCCCAGCTGAAGGCCATGGACCTCGAGTGGGACGTCATGGCCGA
GAAGGAAGCCGAGTGGATCGGCTACTGGGACGAGAACATCAAGGGCAAGGGCAAGTAA

Upstream 100 bases:

>100_bases
GTTCCCGCTTCCGACACGCGTGCAGATCCTGTCTATCACCACACTGAAGGGGGATAAATGAACCATGCGTAACACCTGGT
CCCGCAAGCTCGTGGGTCTG

Downstream 100 bases:

>100_bases
ACCATCCGGGGCAAAGGCCCGTTATACATGAAGGGGAAGGGTCCGTCATCCACAATCGTCTGGTGGGATGAGACCACCAG
GGGGAAAGGAGAGGAGCCAG

Product: iron ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MLVIGLFAAGCGGSGQSPNNNQGGTQTPSNSQTQTQQPQTQEPQEEKRLVIYTGRDQSIIDLMVAKFEEKYPEYKGNVEV
LPMGAQEIMERVRAEKANPQGDIWWGGTQQALSLAVKEGLLAKINPEFASKIADGYKDPEGHWYGEMLLPEVIMYNKEMI
SESELPKDWDDLLDAKWKDQIIIRAVPASGTMRTIYAAMIDRFHQEDGKPDRGYEWLLKLDANTKEYAANPTDLYLKIFR
QEGSLSLWNLQDVLIQAQEGMPFGYIIPESGVPILVDGVGMIAGAKHPQAAEKFLNLLFSDEVQAELAATRFQIPSINLP
ESMQPEWLKELMPQLKAMDLEWDVMAEKEAEWIGYWDENIKGKGK

Sequences:

>Translated_365_residues
MLVIGLFAAGCGGSGQSPNNNQGGTQTPSNSQTQTQQPQTQEPQEEKRLVIYTGRDQSIIDLMVAKFEEKYPEYKGNVEV
LPMGAQEIMERVRAEKANPQGDIWWGGTQQALSLAVKEGLLAKINPEFASKIADGYKDPEGHWYGEMLLPEVIMYNKEMI
SESELPKDWDDLLDAKWKDQIIIRAVPASGTMRTIYAAMIDRFHQEDGKPDRGYEWLLKLDANTKEYAANPTDLYLKIFR
QEGSLSLWNLQDVLIQAQEGMPFGYIIPESGVPILVDGVGMIAGAKHPQAAEKFLNLLFSDEVQAELAATRFQIPSINLP
ESMQPEWLKELMPQLKAMDLEWDVMAEKEAEWIGYWDENIKGKGK
>Mature_365_residues
MLVIGLFAAGCGGSGQSPNNNQGGTQTPSNSQTQTQQPQTQEPQEEKRLVIYTGRDQSIIDLMVAKFEEKYPEYKGNVEV
LPMGAQEIMERVRAEKANPQGDIWWGGTQQALSLAVKEGLLAKINPEFASKIADGYKDPEGHWYGEMLLPEVIMYNKEMI
SESELPKDWDDLLDAKWKDQIIIRAVPASGTMRTIYAAMIDRFHQEDGKPDRGYEWLLKLDANTKEYAANPTDLYLKIFR
QEGSLSLWNLQDVLIQAQEGMPFGYIIPESGVPILVDGVGMIAGAKHPQAAEKFLNLLFSDEVQAELAATRFQIPSINLP
ESMQPEWLKELMPQLKAMDLEWDVMAEKEAEWIGYWDENIKGKGK

Specific function: Probably part of the binding-protein-dependent transport system y4fNOP [H]

COG id: COG1840

COG function: function code P; ABC-type Fe3+ transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 41100; Mature: 41100

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVIGLFAAGCGGSGQSPNNNQGGTQTPSNSQTQTQQPQTQEPQEEKRLVIYTGRDQSII
CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEECCCCHHH
DLMVAKFEEKYPEYKGNVEVLPMGAQEIMERVRAEKANPQGDIWWGGTQQALSLAVKEGL
HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHCCC
LAKINPEFASKIADGYKDPEGHWYGEMLLPEVIMYNKEMISESELPKDWDDLLDAKWKDQ
CEECCHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC
IIIRAVPASGTMRTIYAAMIDRFHQEDGKPDRGYEWLLKLDANTKEYAANPTDLYLKIFR
EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHCCCCHHHHHHEEC
QEGSLSLWNLQDVLIQAQEGMPFGYIIPESGVPILVDGVGMIAGAKHPQAAEKFLNLLFS
CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCEEEECCCHHCCCCCHHHHHHHHHHHHH
DEVQAELAATRFQIPSINLPESMQPEWLKELMPQLKAMDLEWDVMAEKEAEWIGYWDENI
HHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEECCCCC
KGKGK
CCCCC
>Mature Secondary Structure
MLVIGLFAAGCGGSGQSPNNNQGGTQTPSNSQTQTQQPQTQEPQEEKRLVIYTGRDQSII
CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEECCCCHHH
DLMVAKFEEKYPEYKGNVEVLPMGAQEIMERVRAEKANPQGDIWWGGTQQALSLAVKEGL
HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHCCC
LAKINPEFASKIADGYKDPEGHWYGEMLLPEVIMYNKEMISESELPKDWDDLLDAKWKDQ
CEECCHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC
IIIRAVPASGTMRTIYAAMIDRFHQEDGKPDRGYEWLLKLDANTKEYAANPTDLYLKIFR
EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHCCCCHHHHHHEEC
QEGSLSLWNLQDVLIQAQEGMPFGYIIPESGVPILVDGVGMIAGAKHPQAAEKFLNLLFS
CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCEEEECCCHHCCCCCHHHHHHHHHHHHH
DEVQAELAATRFQIPSINLPESMQPEWLKELMPQLKAMDLEWDVMAEKEAEWIGYWDENI
HHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEECCCCC
KGKGK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]