Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
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Accession | NC_006177 |
Length | 3,566,135 |
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The map label for this gene is 51893886
Identifier: 51893886
GI number: 51893886
Start: 2964845
End: 2965942
Strand: Reverse
Name: 51893886
Synonym: STH2748
Alternate gene names: NA
Gene position: 2965942-2964845 (Counterclockwise)
Preceding gene: 51893887
Following gene: 51893885
Centisome position: 83.17
GC content: 63.75
Gene sequence:
>1098_bases TTGCTGGTCATCGGCCTGTTCGCCGCCGGTTGCGGTGGCTCCGGCCAGTCCCCGAACAACAACCAGGGCGGTACTCAGAC TCCGTCCAACTCGCAGACCCAGACCCAGCAGCCGCAGACCCAGGAACCCCAGGAGGAGAAGCGGCTGGTCATCTACACCG GTCGCGACCAGTCCATCATCGACCTGATGGTGGCCAAGTTTGAGGAGAAGTACCCGGAGTACAAGGGCAACGTCGAGGTC CTGCCCATGGGCGCCCAGGAGATCATGGAGCGCGTCCGGGCGGAGAAGGCCAACCCGCAGGGCGACATCTGGTGGGGCGG CACCCAGCAGGCGCTCTCCCTGGCCGTGAAGGAAGGCCTCCTGGCGAAGATCAACCCGGAGTTCGCTTCCAAGATCGCCG ACGGTTACAAGGATCCTGAGGGTCACTGGTACGGCGAGATGCTCCTCCCCGAGGTCATCATGTACAACAAGGAGATGATC TCCGAGAGCGAGCTGCCCAAGGACTGGGATGACCTGCTCGACGCCAAGTGGAAGGACCAGATCATCATCCGCGCCGTGCC GGCTTCGGGCACCATGCGGACGATCTATGCCGCGATGATCGACCGGTTCCACCAGGAGGACGGCAAGCCTGACCGGGGTT ACGAGTGGCTGCTGAAGCTGGACGCCAACACCAAGGAGTACGCGGCCAACCCCACCGACCTGTACCTGAAGATCTTCCGG CAGGAAGGCAGCCTCAGCCTCTGGAACCTGCAGGACGTCCTGATCCAGGCGCAGGAGGGCATGCCCTTCGGTTACATCAT CCCCGAGAGCGGCGTGCCGATCCTGGTGGACGGCGTGGGCATGATCGCCGGCGCCAAGCACCCGCAGGCGGCCGAGAAGT TCCTGAACCTGCTCTTCAGCGACGAGGTGCAGGCGGAGCTGGCGGCCACCCGGTTCCAGATCCCGTCGATCAACCTGCCC GAGTCCATGCAGCCCGAGTGGCTGAAGGAGCTGATGCCCCAGCTGAAGGCCATGGACCTCGAGTGGGACGTCATGGCCGA GAAGGAAGCCGAGTGGATCGGCTACTGGGACGAGAACATCAAGGGCAAGGGCAAGTAA
Upstream 100 bases:
>100_bases GTTCCCGCTTCCGACACGCGTGCAGATCCTGTCTATCACCACACTGAAGGGGGATAAATGAACCATGCGTAACACCTGGT CCCGCAAGCTCGTGGGTCTG
Downstream 100 bases:
>100_bases ACCATCCGGGGCAAAGGCCCGTTATACATGAAGGGGAAGGGTCCGTCATCCACAATCGTCTGGTGGGATGAGACCACCAG GGGGAAAGGAGAGGAGCCAG
Product: iron ABC transporter substrate-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 365; Mature: 365
Protein sequence:
>365_residues MLVIGLFAAGCGGSGQSPNNNQGGTQTPSNSQTQTQQPQTQEPQEEKRLVIYTGRDQSIIDLMVAKFEEKYPEYKGNVEV LPMGAQEIMERVRAEKANPQGDIWWGGTQQALSLAVKEGLLAKINPEFASKIADGYKDPEGHWYGEMLLPEVIMYNKEMI SESELPKDWDDLLDAKWKDQIIIRAVPASGTMRTIYAAMIDRFHQEDGKPDRGYEWLLKLDANTKEYAANPTDLYLKIFR QEGSLSLWNLQDVLIQAQEGMPFGYIIPESGVPILVDGVGMIAGAKHPQAAEKFLNLLFSDEVQAELAATRFQIPSINLP ESMQPEWLKELMPQLKAMDLEWDVMAEKEAEWIGYWDENIKGKGK
Sequences:
>Translated_365_residues MLVIGLFAAGCGGSGQSPNNNQGGTQTPSNSQTQTQQPQTQEPQEEKRLVIYTGRDQSIIDLMVAKFEEKYPEYKGNVEV LPMGAQEIMERVRAEKANPQGDIWWGGTQQALSLAVKEGLLAKINPEFASKIADGYKDPEGHWYGEMLLPEVIMYNKEMI SESELPKDWDDLLDAKWKDQIIIRAVPASGTMRTIYAAMIDRFHQEDGKPDRGYEWLLKLDANTKEYAANPTDLYLKIFR QEGSLSLWNLQDVLIQAQEGMPFGYIIPESGVPILVDGVGMIAGAKHPQAAEKFLNLLFSDEVQAELAATRFQIPSINLP ESMQPEWLKELMPQLKAMDLEWDVMAEKEAEWIGYWDENIKGKGK >Mature_365_residues MLVIGLFAAGCGGSGQSPNNNQGGTQTPSNSQTQTQQPQTQEPQEEKRLVIYTGRDQSIIDLMVAKFEEKYPEYKGNVEV LPMGAQEIMERVRAEKANPQGDIWWGGTQQALSLAVKEGLLAKINPEFASKIADGYKDPEGHWYGEMLLPEVIMYNKEMI SESELPKDWDDLLDAKWKDQIIIRAVPASGTMRTIYAAMIDRFHQEDGKPDRGYEWLLKLDANTKEYAANPTDLYLKIFR QEGSLSLWNLQDVLIQAQEGMPFGYIIPESGVPILVDGVGMIAGAKHPQAAEKFLNLLFSDEVQAELAATRFQIPSINLP ESMQPEWLKELMPQLKAMDLEWDVMAEKEAEWIGYWDENIKGKGK
Specific function: Probably part of the binding-protein-dependent transport system y4fNOP [H]
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 41100; Mature: 41100
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVIGLFAAGCGGSGQSPNNNQGGTQTPSNSQTQTQQPQTQEPQEEKRLVIYTGRDQSII CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEECCCCHHH DLMVAKFEEKYPEYKGNVEVLPMGAQEIMERVRAEKANPQGDIWWGGTQQALSLAVKEGL HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHCCC LAKINPEFASKIADGYKDPEGHWYGEMLLPEVIMYNKEMISESELPKDWDDLLDAKWKDQ CEECCHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC IIIRAVPASGTMRTIYAAMIDRFHQEDGKPDRGYEWLLKLDANTKEYAANPTDLYLKIFR EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHCCCCHHHHHHEEC QEGSLSLWNLQDVLIQAQEGMPFGYIIPESGVPILVDGVGMIAGAKHPQAAEKFLNLLFS CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCEEEECCCHHCCCCCHHHHHHHHHHHHH DEVQAELAATRFQIPSINLPESMQPEWLKELMPQLKAMDLEWDVMAEKEAEWIGYWDENI HHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEECCCCC KGKGK CCCCC >Mature Secondary Structure MLVIGLFAAGCGGSGQSPNNNQGGTQTPSNSQTQTQQPQTQEPQEEKRLVIYTGRDQSII CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEECCCCHHH DLMVAKFEEKYPEYKGNVEVLPMGAQEIMERVRAEKANPQGDIWWGGTQQALSLAVKEGL HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHCCC LAKINPEFASKIADGYKDPEGHWYGEMLLPEVIMYNKEMISESELPKDWDDLLDAKWKDQ CEECCHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC IIIRAVPASGTMRTIYAAMIDRFHQEDGKPDRGYEWLLKLDANTKEYAANPTDLYLKIFR EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHCCCCHHHHHHEEC QEGSLSLWNLQDVLIQAQEGMPFGYIIPESGVPILVDGVGMIAGAKHPQAAEKFLNLLFS CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCEEEECCCHHCCCCCHHHHHHHHHHHHH DEVQAELAATRFQIPSINLPESMQPEWLKELMPQLKAMDLEWDVMAEKEAEWIGYWDENI HHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEECCCCC KGKGK CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]