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The map label for this gene is rbfA [H]

Identifier: 51599054

GI number: 51599054

Start: 849053

End: 849415

Strand: Direct

Name: rbfA [H]

Synonym: BG0828

Alternate gene names: 51599054

Gene position: 849053-849415 (Clockwise)

Preceding gene: 51599053

Following gene: 51599055

Centisome position: 93.9

GC content: 26.17

Gene sequence:

>363_bases
ATGTATAAGAATATAAAAAAGTTTAAACTTGAGAGTTTTATTGCTCAAGAAATTGGCAATTTAATAGTGAGTAGAGGAAT
TAAAGATCCCAGAATTCATTCATTTTTAACCGTGGTTAAAGTAGAATTTTCAAAAGATTTAATAAATGCTAAAGTGTTTA
TGGGTTCGATTAAGGAAGGCGCTTCTTTGGATAATGCAGTTAAAGCTTTAAATAATGCTAAGGGATTTATTCAAAGTCAA
ATTATTAAGCGAATTAAAGTTAGAAGTACTCCTAAATTATTATTTGTTAAGGATGATTCTCTTTCTAAATCATTTTATGT
TAATAAAATCATTGAAGGATTAAATACTACAAGAGAGAATTAA

Upstream 100 bases:

>100_bases
ACTATGCTAATATTAAGGAAGGAGATATAATTGAAGCATTTGAGGTAAAAAAGATAAAAAAAACTTTTAAAACTTAGTAT
TGCTTTATTTATATGTGTTT

Downstream 100 bases:

>100_bases
ATTTGGAAAATGGATTCCTTTTAATTAACAAAGAACAAGGCAAAACTTCTTTTGAAACTCTTTTTCCTATAAAAAAATAT
TTTAATACAAATCATGTTGG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MYKNIKKFKLESFIAQEIGNLIVSRGIKDPRIHSFLTVVKVEFSKDLINAKVFMGSIKEGASLDNAVKALNNAKGFIQSQ
IIKRIKVRSTPKLLFVKDDSLSKSFYVNKIIEGLNTTREN

Sequences:

>Translated_120_residues
MYKNIKKFKLESFIAQEIGNLIVSRGIKDPRIHSFLTVVKVEFSKDLINAKVFMGSIKEGASLDNAVKALNNAKGFIQSQ
IIKRIKVRSTPKLLFVKDDSLSKSFYVNKIIEGLNTTREN
>Mature_120_residues
MYKNIKKFKLESFIAQEIGNLIVSRGIKDPRIHSFLTVVKVEFSKDLINAKVFMGSIKEGASLDNAVKALNNAKGFIQSQ
IIKRIKVRSTPKLLFVKDDSLSKSFYVNKIIEGLNTTREN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=117, Percent_Identity=35.8974358974359, Blast_Score=66, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13576; Mature: 13576

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKNIKKFKLESFIAQEIGNLIVSRGIKDPRIHSFLTVVKVEFSKDLINAKVFMGSIKEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ASLDNAVKALNNAKGFIQSQIIKRIKVRSTPKLLFVKDDSLSKSFYVNKIIEGLNTTREN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYKNIKKFKLESFIAQEIGNLIVSRGIKDPRIHSFLTVVKVEFSKDLINAKVFMGSIKEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ASLDNAVKALNNAKGFIQSQIIKRIKVRSTPKLLFVKDDSLSKSFYVNKIIEGLNTTREN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA