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The map label for this gene is rlpA [H]

Identifier: 51598987

GI number: 51598987

Start: 778658

End: 779446

Strand: Direct

Name: rlpA [H]

Synonym: BG0757

Alternate gene names: 51598987

Gene position: 778658-779446 (Clockwise)

Preceding gene: 51598985

Following gene: 51598988

Centisome position: 86.11

GC content: 30.42

Gene sequence:

>789_bases
ATGAGAAATTTAATTGATGCCCTCGCAAAAGATAATAGAAATTTTGTTTTTCTCTTTGTGTTTTTTTTTATTGCTTCTCA
TTTAAATTCTGCTACAGTAGGCCTTGCTTCATGGTATGGTGAAGCTTTCCACGGCAAAATTACTGCTAATGGCGAAAAAT
TTGATATGATGGCTCTTACTGCTGCTCACAAAGAATTGCCTTTTAATACTGCTGTAAGGGTTACAAATCTTTTAAATAAT
AGATCAGTTGTTGTAAGAATTAATGATAGAGGGCCTTTTAGGAAGGATAGAATAATAGATTTATCAAAACATGCTGCTGA
AAAGCTTGATTTTTTAGGGATAGGAGTTGCTCCTGTAAAAATTGAAGTAATTGAAAGTGTAAATGAAAAAAGACCTTCTG
TATCAAGATCTAATGATTTTAAAAAAGCATTTAATACTCCTGAGATTAAAGAAGAAAGGAAAACCAAGCAATCAGAAGAG
AATGTTTTTATTGAAAATAAATCTTCAAATTTATTAGCAGATTATTCAATTTCTGCCGACAAAGAAACAGATTTTTACAT
ACAAGTTGGATCTTATAGAAAAAAAGATTATGCTGATAGGGCCTATCGAATATTAAAAAAAGCAGGCCTTTTTGTTGTAG
TAAATTCTCATGGGCCTTTTTATACTGTTTTTATTCCTACTAATGCTGATAATATTCAAAGAAATATAGAACTGATTAAA
TCTGCTGGATATAAAGATACTTTAGTAAGAAAAACCAAGGTTCCAGGAGAGAGTCTTATTATGGATTAA

Upstream 100 bases:

>100_bases
TTTTTTCTTTTTATTTATAATTAAATCAAAAAAAATGTGAATAAGCAATTTGTGAGCTTGATTGTTTATTGAAATATGTT
TTTATATTATAATAAACATT

Downstream 100 bases:

>100_bases
TTTTTTAAATTATTTTTTTATCAAAATTATTTATTGACTTTTTAAAGTTTTATGATTATTTTATTTGTTACCAATCCTTT
TGTGGTGGTTTTTTATTCTA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MRNLIDALAKDNRNFVFLFVFFFIASHLNSATVGLASWYGEAFHGKITANGEKFDMMALTAAHKELPFNTAVRVTNLLNN
RSVVVRINDRGPFRKDRIIDLSKHAAEKLDFLGIGVAPVKIEVIESVNEKRPSVSRSNDFKKAFNTPEIKEERKTKQSEE
NVFIENKSSNLLADYSISADKETDFYIQVGSYRKKDYADRAYRILKKAGLFVVVNSHGPFYTVFIPTNADNIQRNIELIK
SAGYKDTLVRKTKVPGESLIMD

Sequences:

>Translated_262_residues
MRNLIDALAKDNRNFVFLFVFFFIASHLNSATVGLASWYGEAFHGKITANGEKFDMMALTAAHKELPFNTAVRVTNLLNN
RSVVVRINDRGPFRKDRIIDLSKHAAEKLDFLGIGVAPVKIEVIESVNEKRPSVSRSNDFKKAFNTPEIKEERKTKQSEE
NVFIENKSSNLLADYSISADKETDFYIQVGSYRKKDYADRAYRILKKAGLFVVVNSHGPFYTVFIPTNADNIQRNIELIK
SAGYKDTLVRKTKVPGESLIMD
>Mature_262_residues
MRNLIDALAKDNRNFVFLFVFFFIASHLNSATVGLASWYGEAFHGKITANGEKFDMMALTAAHKELPFNTAVRVTNLLNN
RSVVVRINDRGPFRKDRIIDLSKHAAEKLDFLGIGVAPVKIEVIESVNEKRPSVSRSNDFKKAFNTPEIKEERKTKQSEE
NVFIENKSSNLLADYSISADKETDFYIQVGSYRKKDYADRAYRILKKAGLFVVVNSHGPFYTVFIPTNADNIQRNIELIK
SAGYKDTLVRKTKVPGESLIMD

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=78, Percent_Identity=51.2820512820513, Blast_Score=87, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 29706; Mature: 29706

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLIDALAKDNRNFVFLFVFFFIASHLNSATVGLASWYGEAFHGKITANGEKFDMMALT
CCHHHHHHHCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHCHHHCCEEEECCCEEEEEEEE
AAHKELPFNTAVRVTNLLNNRSVVVRINDRGPFRKDRIIDLSKHAAEKLDFLGIGVAPVK
HHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHEEECCCCCEE
IEVIESVNEKRPSVSRSNDFKKAFNTPEIKEERKTKQSEENVFIENKSSNLLADYSISAD
HHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCCEEEECCCCCEEEEEECCCC
KETDFYIQVGSYRKKDYADRAYRILKKAGLFVVVNSHGPFYTVFIPTNADNIQRNIELIK
CCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHH
SAGYKDTLVRKTKVPGESLIMD
HCCCCHHHHHHCCCCCHHHCCC
>Mature Secondary Structure
MRNLIDALAKDNRNFVFLFVFFFIASHLNSATVGLASWYGEAFHGKITANGEKFDMMALT
CCHHHHHHHCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHCHHHCCEEEECCCEEEEEEEE
AAHKELPFNTAVRVTNLLNNRSVVVRINDRGPFRKDRIIDLSKHAAEKLDFLGIGVAPVK
HHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHEEECCCCCEE
IEVIESVNEKRPSVSRSNDFKKAFNTPEIKEERKTKQSEENVFIENKSSNLLADYSISAD
HHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCCEEEECCCCCEEEEEECCCC
KETDFYIQVGSYRKKDYADRAYRILKKAGLFVVVNSHGPFYTVFIPTNADNIQRNIELIK
CCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHH
SAGYKDTLVRKTKVPGESLIMD
HCCCCHHHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10688204 [H]