Click here to switch to the map view.

The map label for this gene is rpmD [H]

Identifier: 51598751

GI number: 51598751

Start: 507122

End: 507433

Strand: Direct

Name: rpmD [H]

Synonym: BG0508

Alternate gene names: 51598751

Gene position: 507122-507433 (Clockwise)

Preceding gene: 51598750

Following gene: 51598752

Centisome position: 56.08

GC content: 26.28

Gene sequence:

>312_bases
ATGATTAAAAGGAAATTAAGATTGCAGCTAAAGAAAGCTAGGTTTAATGCCTCAAGGTCCAGGTCTAAAAATAAATGTTT
TATTAGAAGAATGGAAAAGAATAGGGAAATTATTTCTAAAAATAATATTAATGTACAAGTTTTTCTCGTAAGAAGTCTTA
TTGGGAAATTAAATAAAAAGGTCAAAGTTTTAAAAGCGCTAGGTTTAAATAAAATAGGCGATAAAAAGGTCCATTTTTTA
AATGAATCTATTAAAGGCATGCTTAACGAGACTATTAATATGATTTTATTAAGCGAGGTAAATAATGTTTAA

Upstream 100 bases:

>100_bases
AGTAAAGGCGACCTTTAAGGCATTTGATTTAGTTTTAAATGCTGAAAAAGTGGCAGAGATGCGCGGAAAAAAAACTTTAA
AAACTTTATGGGGTTAATAT

Downstream 100 bases:

>100_bases
CCTATTAAAGCCTAAAGGAGCGAGCAAGCGCCGTAAAATTGTTGGTAGAGGTCCGGGTTCAGGACTTGGTAAAACTTCTG
GGAGAGGGCAAAAGGGTCAA

Product: 50S ribosomal protein L30

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MIKRKLRLQLKKARFNASRSRSKNKCFIRRMEKNREIISKNNINVQVFLVRSLIGKLNKKVKVLKALGLNKIGDKKVHFL
NESIKGMLNETINMILLSEVNNV

Sequences:

>Translated_103_residues
MIKRKLRLQLKKARFNASRSRSKNKCFIRRMEKNREIISKNNINVQVFLVRSLIGKLNKKVKVLKALGLNKIGDKKVHFL
NESIKGMLNETINMILLSEVNNV
>Mature_103_residues
MIKRKLRLQLKKARFNASRSRSKNKCFIRRMEKNREIISKNNINVQVFLVRSLIGKLNKKVKVLKALGLNKIGDKKVHFL
NESIKGMLNETINMILLSEVNNV

Specific function: Unknown

COG id: COG1841

COG function: function code J; Ribosomal protein L30/L7E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005996
- InterPro:   IPR016082 [H]

Pfam domain/function: PF00327 Ribosomal_L30 [H]

EC number: NA

Molecular weight: Translated: 12005; Mature: 12005

Theoretical pI: Translated: 11.97; Mature: 11.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRKLRLQLKKARFNASRSRSKNKCFIRRMEKNREIISKNNINVQVFLVRSLIGKLNKK
CCCHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHCHHHHCCCCCCEEEHHHHHHHHHHHHH
VKVLKALGLNKIGDKKVHFLNESIKGMLNETINMILLSEVNNV
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIKRKLRLQLKKARFNASRSRSKNKCFIRRMEKNREIISKNNINVQVFLVRSLIGKLNKK
CCCHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHCHHHHCCCCCCEEEHHHHHHHHHHHHH
VKVLKALGLNKIGDKKVHFLNESIKGMLNETINMILLSEVNNV
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA