Definition Borrelia garinii PBi chromosome chromosome linear, complete sequence.
Accession NC_006156
Length 904,246

Click here to switch to the map view.

The map label for this gene is rpmC [H]

Identifier: 51598741

GI number: 51598741

Start: 503330

End: 503530

Strand: Direct

Name: rpmC [H]

Synonym: BG0498

Alternate gene names: 51598741

Gene position: 503330-503530 (Clockwise)

Preceding gene: 51598740

Following gene: 51598742

Centisome position: 55.66

GC content: 25.87

Gene sequence:

>201_bases
ATGTTAAAAAGTTTTAAGAATTTTACTCTTGAAGACATGAAGGCCAAAAGGCTAGAATTAAAGAAAGAATATTTAGATTT
AAGATTTAAATCTATTGTTGGTCATGTTGAAAATCCTTTAAAGAAAAGAGAGATTAGACGTGATATTGCAAGGCTTAATA
CAATAATTTGTGAATATGAATTAGGTATTAGAAAGGTTTAA

Upstream 100 bases:

>100_bases
CTGGAGTTATAGAGGAGCTTGCTCAAGAGGCTATGTCACTTGCGAGTTCTAAACTTCCAGTAAAAACCATGTTTGTTGTA
AGACGAGATTTGAGGTAATT

Downstream 100 bases:

>100_bases
ATATGGCAAGAGAAAATAAAAAAGAATTAATTGGTAAGGTTGTTAGTGATAAGATGTCTAAGACTATAGTAGTAGAAATT
GTTCAAAGGAAGATGCATCC

Product: 50S ribosomal protein L29

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MLKSFKNFTLEDMKAKRLELKKEYLDLRFKSIVGHVENPLKKREIRRDIARLNTIICEYELGIRKV

Sequences:

>Translated_66_residues
MLKSFKNFTLEDMKAKRLELKKEYLDLRFKSIVGHVENPLKKREIRRDIARLNTIICEYELGIRKV
>Mature_66_residues
MLKSFKNFTLEDMKAKRLELKKEYLDLRFKSIVGHVENPLKKREIRRDIARLNTIICEYELGIRKV

Specific function: Unknown

COG id: COG0255

COG function: function code J; Ribosomal protein L29

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L29P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001854 [H]

Pfam domain/function: PF00831 Ribosomal_L29 [H]

EC number: NA

Molecular weight: Translated: 7980; Mature: 7980

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKSFKNFTLEDMKAKRLELKKEYLDLRFKSIVGHVENPLKKREIRRDIARLNTIICEYE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LGIRKV
CCCCCC
>Mature Secondary Structure
MLKSFKNFTLEDMKAKRLELKKEYLDLRFKSIVGHVENPLKKREIRRDIARLNTIICEYE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LGIRKV
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA