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The map label for this gene is yidC

Identifier: 51598232

GI number: 51598232

Start: 4712105

End: 4713745

Strand: Direct

Name: yidC

Synonym: YPTB3948

Alternate gene names: 51598232

Gene position: 4712105-4713745 (Clockwise)

Preceding gene: 51598231

Following gene: 51598233

Centisome position: 99.31

GC content: 48.2

Gene sequence:

>1641_bases
ATGGATTCGCAACGCAATCTTCTACTCATCGCTCTGCTGTTCGTGTCTTTCATGATCTGGCAAGCTTGGCAAGTGGATAA
CAATCCACAACCAACCGCTCAGACCACGCAACAGACTACGAATACCGCTACCGGTGATAAAGCAAGCCAGGCTGTGCCAG
GCAGCGGTCAGGGTCAACTGATCACTGTAAAAACTGATGTGCTGTCTCTGACTATTAATACCCGTGGCGGTGACATTGAG
CAGGCTAACCTGCTGGCTTACCCAGATACTTTGGGTTCAAGTAATACGTTCGAATTACTGGAAACCACTCCAAGTTTCGT
TTATCAGGCACAAAGTGGTCTGACAGGCAAAAATGGCCCGGATAACCCAGCGAATGGCGACCGTCCTTTGTTTGAAGTGC
CACAAACCAGCTTTGTTCTGGCAGATGGTCAGGATGAACTGCGCATTCCATTGACCTTCACAAGTAAAGATGGCTCTGTT
TTCATTAAGACTTTCGTGCTGAAACGTAACGATTACGCCATTGGCGTGGATTATCACGTTAACAACGCCTCCGCTGCCCC
ACTGGAGCTGACGCTGTTTGGTCAATTGAAACAAAGCATCAACTTGCCTAAAAAGCGTGATACCGGTAGCAATAACTTTG
CGCTACAGACTTATCGTGGTGCGGCTTACTCTTCTGATGAAACTAAATATAAGAAATATAGCTTTAGTGACATCGAAGAC
AAAAATCTGGATATCACCACCAAAGGTGGTTGGGTCGCTATGTTGCAGCAGTATTTCGCCACAGCATGGATCCCAGCGGC
TAACGAAACCAACACCTTCTACTCTGCTGAGTTAGGTAACGGCCTGGCCGCAATTGGTTTCAAAGGTGCGCCTGTTGTTA
TCCAACCCGGTGAACAGAAACAACTGAGTGCCACACTGTGGGTGGGCCCAGAGATTCAGAATAAAATGGCGGAAATTGCG
CCACATCTGGACCTGACTGTTGATTATGGTTGGTTGTGGTTCATTTCTCAGCCACTGTTCAAACTACTGAAGTTTATCCA
CAGCTTTGTGGGGAACTGGGGCTTCTCCATCATCGTTATTACCTTTATCGTGCGCGGTATCATGTACCCGCTGACAAAAG
CGCAATACACCTCGATGGCGAAAATGCGTTTGCTGCAGCCTAAACTGGCCGCCATGCGTGAGCGTATCGGTGACGATAAG
CAGCGTATGAGTCAGGAGATGATGGCGCTGTACAAAGCGGAGAAGGTTAACCCGCTGGGTGGCTGCTTACCGCTGATCAT
TCAGATGCCAATCTTCTTGGCGTTGTACTACATGTTGATGAGTTCTGTTGAGTTGCGCCATGCGCCATTCATTCTGTGGA
TTCATGACCTGTCAGCACAAGACCCGTACTACATTCTGCCAATTCTGATGGGTATCACCATGTACTTCATTCAGAAGATG
TCACCAACCACCGTGACTGACCCAATGCAGCAGAAGATCATGACCTTTATGCCGGTTATCTTCACGGTATTCTTCCTGTG
GTTCCCGGCAGGTCTGGTGCTGTACTATATCGTCAGCAACCTGGTGACCATCCTGCAACAACAGCTGATTTATCGTGGTC
TGGAAAAACGTGGCTTACACAGCCGCGAGAAGAAAAAATAA

Upstream 100 bases:

>100_bases
GTTGGTTAACACTGAAACGCGTATTAAAATGCCACCCTTTGAACTCAGGTGGTGATGACCCCGTGCCGCCGAAACTCGAC
GATAACAGAGAACACTAACG

Downstream 100 bases:

>100_bases
CCCACAGCGATAATCATGAGTATTTAGGGCGGTCAATATGACCGCCTTATTCTTTTTACAGAAGCCTGATTTTTTACCTT
CAGATTTGTGTAAAAATAAT

Product: inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 546; Mature: 546

Protein sequence:

>546_residues
MDSQRNLLLIALLFVSFMIWQAWQVDNNPQPTAQTTQQTTNTATGDKASQAVPGSGQGQLITVKTDVLSLTINTRGGDIE
QANLLAYPDTLGSSNTFELLETTPSFVYQAQSGLTGKNGPDNPANGDRPLFEVPQTSFVLADGQDELRIPLTFTSKDGSV
FIKTFVLKRNDYAIGVDYHVNNASAAPLELTLFGQLKQSINLPKKRDTGSNNFALQTYRGAAYSSDETKYKKYSFSDIED
KNLDITTKGGWVAMLQQYFATAWIPAANETNTFYSAELGNGLAAIGFKGAPVVIQPGEQKQLSATLWVGPEIQNKMAEIA
PHLDLTVDYGWLWFISQPLFKLLKFIHSFVGNWGFSIIVITFIVRGIMYPLTKAQYTSMAKMRLLQPKLAAMRERIGDDK
QRMSQEMMALYKAEKVNPLGGCLPLIIQMPIFLALYYMLMSSVELRHAPFILWIHDLSAQDPYYILPILMGITMYFIQKM
SPTTVTDPMQQKIMTFMPVIFTVFFLWFPAGLVLYYIVSNLVTILQQQLIYRGLEKRGLHSREKKK

Sequences:

>Translated_546_residues
MDSQRNLLLIALLFVSFMIWQAWQVDNNPQPTAQTTQQTTNTATGDKASQAVPGSGQGQLITVKTDVLSLTINTRGGDIE
QANLLAYPDTLGSSNTFELLETTPSFVYQAQSGLTGKNGPDNPANGDRPLFEVPQTSFVLADGQDELRIPLTFTSKDGSV
FIKTFVLKRNDYAIGVDYHVNNASAAPLELTLFGQLKQSINLPKKRDTGSNNFALQTYRGAAYSSDETKYKKYSFSDIED
KNLDITTKGGWVAMLQQYFATAWIPAANETNTFYSAELGNGLAAIGFKGAPVVIQPGEQKQLSATLWVGPEIQNKMAEIA
PHLDLTVDYGWLWFISQPLFKLLKFIHSFVGNWGFSIIVITFIVRGIMYPLTKAQYTSMAKMRLLQPKLAAMRERIGDDK
QRMSQEMMALYKAEKVNPLGGCLPLIIQMPIFLALYYMLMSSVELRHAPFILWIHDLSAQDPYYILPILMGITMYFIQKM
SPTTVTDPMQQKIMTFMPVIFTVFFLWFPAGLVLYYIVSNLVTILQQQLIYRGLEKRGLHSREKKK
>Mature_546_residues
MDSQRNLLLIALLFVSFMIWQAWQVDNNPQPTAQTTQQTTNTATGDKASQAVPGSGQGQLITVKTDVLSLTINTRGGDIE
QANLLAYPDTLGSSNTFELLETTPSFVYQAQSGLTGKNGPDNPANGDRPLFEVPQTSFVLADGQDELRIPLTFTSKDGSV
FIKTFVLKRNDYAIGVDYHVNNASAAPLELTLFGQLKQSINLPKKRDTGSNNFALQTYRGAAYSSDETKYKKYSFSDIED
KNLDITTKGGWVAMLQQYFATAWIPAANETNTFYSAELGNGLAAIGFKGAPVVIQPGEQKQLSATLWVGPEIQNKMAEIA
PHLDLTVDYGWLWFISQPLFKLLKFIHSFVGNWGFSIIVITFIVRGIMYPLTKAQYTSMAKMRLLQPKLAAMRERIGDDK
QRMSQEMMALYKAEKVNPLGGCLPLIIQMPIFLALYYMLMSSVELRHAPFILWIHDLSAQDPYYILPILMGITMYFIQKM
SPTTVTDPMQQKIMTFMPVIFTVFFLWFPAGLVLYYIVSNLVTILQQQLIYRGLEKRGLHSREKKK

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily

Homologues:

Organism=Escherichia coli, GI1790140, Length=547, Percent_Identity=77.3308957952468, Blast_Score=870, Evalue=0.0,
Organism=Drosophila melanogaster, GI24662345, Length=206, Percent_Identity=25.2427184466019, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21356443, Length=206, Percent_Identity=25.2427184466019, Blast_Score=77, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OXAA_YERPE (Q8Z9U3)

Other databases:

- EMBL:   AL590842
- EMBL:   AE009952
- EMBL:   AE017042
- PIR:   AB0498
- RefSeq:   NP_671407.1
- RefSeq:   NP_995271.1
- RefSeq:   YP_002348953.1
- ProteinModelPortal:   Q8Z9U3
- SMR:   Q8Z9U3
- IntAct:   Q8Z9U3
- GeneID:   1149063
- GeneID:   1176930
- GeneID:   2764769
- GenomeReviews:   AE009952_GR
- GenomeReviews:   AE017042_GR
- GenomeReviews:   AL590842_GR
- KEGG:   ype:YPO4102
- KEGG:   ypk:y4117
- KEGG:   ypm:YP_4009
- HOGENOM:   HBG507812
- OMA:   TYRGAAF
- ProtClustDB:   PRK01318
- BioCyc:   YPES187410:Y4117-MONOMER
- BioCyc:   YPES214092:YPO4102-MONOMER
- HAMAP:   MF_01810
- InterPro:   IPR019998
- InterPro:   IPR001708
- PANTHER:   PTHR12428
- PRINTS:   PR00701
- PRINTS:   PR01900
- TIGRFAMs:   TIGR03593
- TIGRFAMs:   TIGR03592

Pfam domain/function: PF02096 60KD_IMP

EC number: NA

Molecular weight: Translated: 61292; Mature: 61292

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS00496 PII_GLNB_UMP

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1da75064)-; HASH(0x1eac68f8)-; HASH(0x1dbadc7c)-; HASH(0x1ea44398)-; HASH(0x1dbae294)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSQRNLLLIALLFVSFMIWQAWQVDNNPQPTAQTTQQTTNTATGDKASQAVPGSGQGQL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEE
ITVKTDVLSLTINTRGGDIEQANLLAYPDTLGSSNTFELLETTPSFVYQAQSGLTGKNGP
EEEEEEEEEEEEECCCCCCCCCCEEECCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCC
DNPANGDRPLFEVPQTSFVLADGQDELRIPLTFTSKDGSVFIKTFVLKRNDYAIGVDYHV
CCCCCCCCCEEECCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEEEECCCEEEEEEEEE
NNASAAPLELTLFGQLKQSINLPKKRDTGSNNFALQTYRGAAYSSDETKYKKYSFSDIED
CCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHEECCCCCCCC
KNLDITTKGGWVAMLQQYFATAWIPAANETNTFYSAELGNGLAAIGFKGAPVVIQPGEQK
CCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEECCCCCCEEECCCCCC
QLSATLWVGPEIQNKMAEIAPHLDLTVDYGWLWFISQPLFKLLKFIHSFVGNWGFSIIVI
CEEEEEEECHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TFIVRGIMYPLTKAQYTSMAKMRLLQPKLAAMRERIGDDKQRMSQEMMALYKAEKVNPLG
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
GCLPLIIQMPIFLALYYMLMSSVELRHAPFILWIHDLSAQDPYYILPILMGITMYFIQKM
HHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHC
SPTTVTDPMQQKIMTFMPVIFTVFFLWFPAGLVLYYIVSNLVTILQQQLIYRGLEKRGLH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SREKKK
CHHCCH
>Mature Secondary Structure
MDSQRNLLLIALLFVSFMIWQAWQVDNNPQPTAQTTQQTTNTATGDKASQAVPGSGQGQL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEE
ITVKTDVLSLTINTRGGDIEQANLLAYPDTLGSSNTFELLETTPSFVYQAQSGLTGKNGP
EEEEEEEEEEEEECCCCCCCCCCEEECCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCC
DNPANGDRPLFEVPQTSFVLADGQDELRIPLTFTSKDGSVFIKTFVLKRNDYAIGVDYHV
CCCCCCCCCEEECCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEEEECCCEEEEEEEEE
NNASAAPLELTLFGQLKQSINLPKKRDTGSNNFALQTYRGAAYSSDETKYKKYSFSDIED
CCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHEECCCCCCCC
KNLDITTKGGWVAMLQQYFATAWIPAANETNTFYSAELGNGLAAIGFKGAPVVIQPGEQK
CCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEECCCCCCEEECCCCCC
QLSATLWVGPEIQNKMAEIAPHLDLTVDYGWLWFISQPLFKLLKFIHSFVGNWGFSIIVI
CEEEEEEECHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TFIVRGIMYPLTKAQYTSMAKMRLLQPKLAAMRERIGDDKQRMSQEMMALYKAEKVNPLG
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
GCLPLIIQMPIFLALYYMLMSSVELRHAPFILWIHDLSAQDPYYILPILMGITMYFIQKM
HHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHC
SPTTVTDPMQQKIMTFMPVIFTVFFLWFPAGLVLYYIVSNLVTILQQQLIYRGLEKRGLH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SREKKK
CHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430