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The map label for this gene is xerD [H]

Identifier: 51597440

GI number: 51597440

Start: 3688397

End: 3689380

Strand: Reverse

Name: xerD [H]

Synonym: YPTB3129

Alternate gene names: 51597440

Gene position: 3689380-3688397 (Counterclockwise)

Preceding gene: 51597441

Following gene: 51597439

Centisome position: 77.76

GC content: 44.31

Gene sequence:

>984_bases
ATGTCGATTAAGAAACTTGATGATGGTCAATATGTTGTGGATATCAGGCCGGCTGGTCGCAACGGAAAGCGGATCAGGCG
GACGTTTAGTAAAAAGCACGAAGCTGTAGCGTTTGAAAAATACGTGGTCGTCAATTATCACGAGAAAGAATGGCTATCAA
AACCGACAGACAAGCGATCCCTCTCTGAGCTGTCAACCCTGTGGTGGTCATACCACGGTCAAAATATGGACTATGGACAA
AAGTATAAAGTTCAACTGGCTAAAGTCATAAGGATAATGTCTGACCTTTGTGCTTTCCAAATTGACAAAAACGTCATTGC
AAGATACCGCGCGATTCGCCTGGCTGGCGGCGTGAAAGCGTCTAGCGTCAATAGAGATTTAGCGGTTCTTAGCGGAATGT
TTACAGCGTTGATTAATGCGGGAGTGTATCACTCCGAACACCCGTTGGCAGGGATCAGTAAATTGAAGCCAAAACAGACA
GCCAGGGCGTTTCTGTCTCAGAGTGAAATTAAGAAACTGCTTAACTGCCTGGATGGCGATAATAGACGCGTTGCCATTTT
GTGTCTGAGTACCGGGGCGAGATGGGGTGAAGCGATAAAATTAAGGACTGAACACATCATTGATAACAGGATAACGTTTG
TTGCGACAAAGAACGGCAAGCAACGGACTGTCCCCATATCTAGTGATGTGTTCAACGATCTGACAGCGATGAAATCAGGA
TTGTTGTTTAATGATGCGGCATATCTGATATTTCGCCAAAAACTGAAATCAGTGAAGACAGACCTACCCCAGGGTCAGGC
GACACATGTCTTGCGTCACACTTTTGCAACTCACTTTATGATAAATGGAGGAAACATCATTACATTGCAACGAATACTCG
GACATTCAACTATTCAGCAAACAATGCTCTATGCACACTTTTCACCTGATTACTTGCAAGATGCAGTTTCGTTCAATCCG
CTAAAGGGGAAAACATCTGTTTAG

Upstream 100 bases:

>100_bases
AATATATCGCCCATCAGACAAAAAGACTGGTTAAGTATTTATAAAGTATTCATTTTTGAAATATCGTTTCAAAATAATTT
CTACATCGGAGGGTTTTCTT

Downstream 100 bases:

>100_bases
TGTCCACGTTTTGTCCACATACGGGTATCTTAAAGGTACTTTGAGTGGCTTGTAGTATCTGCAACTCCTTGATTCTCCGC
GCCGCGCCGGTGGTGTGGGG

Product: phage integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MSIKKLDDGQYVVDIRPAGRNGKRIRRTFSKKHEAVAFEKYVVVNYHEKEWLSKPTDKRSLSELSTLWWSYHGQNMDYGQ
KYKVQLAKVIRIMSDLCAFQIDKNVIARYRAIRLAGGVKASSVNRDLAVLSGMFTALINAGVYHSEHPLAGISKLKPKQT
ARAFLSQSEIKKLLNCLDGDNRRVAILCLSTGARWGEAIKLRTEHIIDNRITFVATKNGKQRTVPISSDVFNDLTAMKSG
LLFNDAAYLIFRQKLKSVKTDLPQGQATHVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYAHFSPDYLQDAVSFNP
LKGKTSV

Sequences:

>Translated_327_residues
MSIKKLDDGQYVVDIRPAGRNGKRIRRTFSKKHEAVAFEKYVVVNYHEKEWLSKPTDKRSLSELSTLWWSYHGQNMDYGQ
KYKVQLAKVIRIMSDLCAFQIDKNVIARYRAIRLAGGVKASSVNRDLAVLSGMFTALINAGVYHSEHPLAGISKLKPKQT
ARAFLSQSEIKKLLNCLDGDNRRVAILCLSTGARWGEAIKLRTEHIIDNRITFVATKNGKQRTVPISSDVFNDLTAMKSG
LLFNDAAYLIFRQKLKSVKTDLPQGQATHVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYAHFSPDYLQDAVSFNP
LKGKTSV
>Mature_326_residues
SIKKLDDGQYVVDIRPAGRNGKRIRRTFSKKHEAVAFEKYVVVNYHEKEWLSKPTDKRSLSELSTLWWSYHGQNMDYGQK
YKVQLAKVIRIMSDLCAFQIDKNVIARYRAIRLAGGVKASSVNRDLAVLSGMFTALINAGVYHSEHPLAGISKLKPKQTA
RAFLSQSEIKKLLNCLDGDNRRVAILCLSTGARWGEAIKLRTEHIIDNRITFVATKNGKQRTVPISSDVFNDLTAMKSGL
LFNDAAYLIFRQKLKSVKTDLPQGQATHVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYAHFSPDYLQDAVSFNPL
KGKTSV

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36911; Mature: 36780

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKKLDDGQYVVDIRPAGRNGKRIRRTFSKKHEAVAFEKYVVVNYHEKEWLSKPTDKRS
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHEEEEEEEEEEECHHHHCCCCCCHHH
LSELSTLWWSYHGQNMDYGQKYKVQLAKVIRIMSDLCAFQIDKNVIARYRAIRLAGGVKA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCC
SSVNRDLAVLSGMFTALINAGVYHSEHPLAGISKLKPKQTARAFLSQSEIKKLLNCLDGD
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
NRRVAILCLSTGARWGEAIKLRTEHIIDNRITFVATKNGKQRTVPISSDVFNDLTAMKSG
CCEEEEEEEECCCCCCCEEEHHHHHHHCCCEEEEEECCCCEEECCCCHHHHHHHHHHHCC
LLFNDAAYLIFRQKLKSVKTDLPQGQATHVLRHTFATHFMINGGNIITLQRILGHSTIQQ
CEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEECCCCEEEHHHHHCHHHHHH
TMLYAHFSPDYLQDAVSFNPLKGKTSV
HHHHEECCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SIKKLDDGQYVVDIRPAGRNGKRIRRTFSKKHEAVAFEKYVVVNYHEKEWLSKPTDKRS
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHEEEEEEEEEEECHHHHCCCCCCHHH
LSELSTLWWSYHGQNMDYGQKYKVQLAKVIRIMSDLCAFQIDKNVIARYRAIRLAGGVKA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCC
SSVNRDLAVLSGMFTALINAGVYHSEHPLAGISKLKPKQTARAFLSQSEIKKLLNCLDGD
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
NRRVAILCLSTGARWGEAIKLRTEHIIDNRITFVATKNGKQRTVPISSDVFNDLTAMKSG
CCEEEEEEEECCCCCCCEEEHHHHHHHCCCEEEEEECCCCEEECCCCHHHHHHHHHHHCC
LLFNDAAYLIFRQKLKSVKTDLPQGQATHVLRHTFATHFMINGGNIITLQRILGHSTIQQ
CEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEECCCCEEEHHHHHCHHHHHH
TMLYAHFSPDYLQDAVSFNPLKGKTSV
HHHHEECCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]