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The map label for this gene is ispF

Identifier: 51595121

GI number: 51595121

Start: 926749

End: 927237

Strand: Direct

Name: ispF

Synonym: YPTB0771

Alternate gene names: 51595121

Gene position: 926749-927237 (Clockwise)

Preceding gene: 51595120

Following gene: 51595122

Centisome position: 19.53

GC content: 48.26

Gene sequence:

>489_bases
ATGCGGATCGGTCATGGTTTCGATGTTCATAAATTTGGCGAGAATGGCAGTGGTCCACTCATTATTGGTGGCGTGCGTAT
CCCATATGAAAAGGGGTTACTGGCCCATTCTGACGGCGATGTTGCATTACATGCGGCCACTGATGCGCTATTAGGCGCTG
CTGCATTAGGTGATATCGGGAAACTCTTCCCCGACACTGACCCGGCATTTAAAGGCGCAGATAGCCGAGGTTTACTGCGA
GAAGCGTATCGCCGTATTCTGGCCAAAGGCTATAAATTGGGGAATCTGGATATTACCATTATTGCCCAGGCACCTAAAAT
GGCACCGCATATTCCACAAATGCGCGTTAATTTAGCAGAAGACCTACAATGTCATATGGATGACATCAACGTCAAAGCGA
CCACCACGGAACAGCTTGGTTTTACCGGGCGTGGTGAAGGTATTGCGTGTGAAGCGGTGGTTTTATTAGTTAACGTAGAA
CAGGGTTAA

Upstream 100 bases:

>100_bases
CGACAAGTCAGTGAGATGGGTAAGCGGAAGTCGTGAACGTTAATCAAGACTAACGGCACTGCAACGTCAAATAGTCAGAA
TATTATAAGGAATGCATATA

Downstream 100 bases:

>100_bases
GGCATAACGAATGGATATGGAAAACCTGACCTGGCTACACGGTAAACCTACGGCGAGCGGTATTTTAAAAGCGAATCCGG
AAGATTTTGTTGTCGTAGAG

Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Products: NA

Alternate protein names: MECDP-synthase; MECPS [H]

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MRIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLR
EAYRRILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAEDLQCHMDDINVKATTTEQLGFTGRGEGIACEAVVLLVNVE
QG

Sequences:

>Translated_162_residues
MRIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLR
EAYRRILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAEDLQCHMDDINVKATTTEQLGFTGRGEGIACEAVVLLVNVE
QG
>Mature_162_residues
MRIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLR
EAYRRILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAEDLQCHMDDINVKATTTEQLGFTGRGEGIACEAVVLLVNVE
QG

Specific function: Converts 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) and CMP [H]

COG id: COG0245

COG function: function code I; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ispF family [H]

Homologues:

Organism=Escherichia coli, GI1789103, Length=161, Percent_Identity=83.8509316770186, Blast_Score=258, Evalue=1e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003526
- InterPro:   IPR020555 [H]

Pfam domain/function: PF02542 YgbB [H]

EC number: =4.6.1.12 [H]

Molecular weight: Translated: 17182; Mature: 17182

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS01350 ISPF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIG
CCCCCCCCEEECCCCCCCCEEEEEEECCHHCCEEEECCCCEEEEEHHHHHHHHHHHHHHH
KLFPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAE
HHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCEEEEEEECCCCCCCCCCHHHHCCHH
DLQCHMDDINVKATTTEQLGFTGRGEGIACEAVVLLVNVEQG
HHEEECCCCEEEEEEHHHCCCCCCCCCEEEEEEEEEEEECCC
>Mature Secondary Structure
MRIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIG
CCCCCCCCEEECCCCCCCCEEEEEEECCHHCCEEEECCCCEEEEEHHHHHHHHHHHHHHH
KLFPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAE
HHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCEEEEEEECCCCCCCCCCHHHHCCHH
DLQCHMDDINVKATTTEQLGFTGRGEGIACEAVVLLVNVEQG
HHEEECCCCEEEEEEHHHCCCCCCCCCEEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA