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The map label for this gene is sodC

Identifier: 51595106

GI number: 51595106

Start: 912099

End: 912668

Strand: Direct

Name: sodC

Synonym: YPTB0756

Alternate gene names: 51595106

Gene position: 912099-912668 (Clockwise)

Preceding gene: 51595105

Following gene: 51595107

Centisome position: 19.22

GC content: 50.7

Gene sequence:

>570_bases
ATGAAATTAAGTACATTATTGCTACCTGTTATTCTTTACTCCAGCGCAACACTGGCCGCTAACATGGCTGGCATGAATGA
TAAGGCCAGCATGAATGATAAGGCTAGCATGACTGTGAAAATCAACGAATCATTGCCACAAGGTAATGGGAAAGCGCTTG
GCACCGTGACGGTGACTGAAACCGCTTATGGCTTACTGTTTACGCCACATCTCACTGGGCTGGCTCCGGGAATTCACGGT
TTCCATCTGCATGAAAAACCCAGTTGTGCTCCGGGGATGAAAGATGGCAAGGCAGTGCCAGCATTGGCAGCCGGGGGGCA
TCTTGACCCAAATAAGACCGGGGTACACCTTGGTCCTTACAACGATAAAGGGCATCTGGGGGATCTGCCGGGATTGGTGG
TTAATGCAGATGGCACCGCCACCTATCCCGTATTGGCTCCGCGCCTGAAATCGTTGTCAGAGGTGAAACAGCATGCGTTA
ATGATCCATGCTGGCGGTGATAATTACTCTGATCATCCAATGCCTTTAGGCGGTGGTGGCGCACGGATGGCATGTGGAGT
CATTGAGTAA

Upstream 100 bases:

>100_bases
TGTGTGCGGGAGTATGAAGCATAAGTAATAATTAATCGTCAAAAGTTTCCTATTGACAAGGTTAAACCAGACTTAATCAA
CATATAAGGGATATAACAAT

Downstream 100 bases:

>100_bases
CCGTCTGATACAGTTAAACTGGCTACCCGAGCGTAGCCAGTTTGGTGGAGGCCGGGTAATCTGCGATAATCGGTCACTGA
TTTGAATAACGATAGAGATA

Product: superoxide dismutase precursor (Cu-Zn)

Products: NA

Alternate protein names: sodCI [H]

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MKLSTLLLPVILYSSATLAANMAGMNDKASMNDKASMTVKINESLPQGNGKALGTVTVTETAYGLLFTPHLTGLAPGIHG
FHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPRLKSLSEVKQHAL
MIHAGGDNYSDHPMPLGGGGARMACGVIE

Sequences:

>Translated_189_residues
MKLSTLLLPVILYSSATLAANMAGMNDKASMNDKASMTVKINESLPQGNGKALGTVTVTETAYGLLFTPHLTGLAPGIHG
FHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPRLKSLSEVKQHAL
MIHAGGDNYSDHPMPLGGGGARMACGVIE
>Mature_189_residues
MKLSTLLLPVILYSSATLAANMAGMNDKASMNDKASMTVKINESLPQGNGKALGTVTVTETAYGLLFTPHLTGLAPGIHG
FHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPRLKSLSEVKQHAL
MIHAGGDNYSDHPMPLGGGGARMACGVIE

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=155, Percent_Identity=61.9354838709677, Blast_Score=188, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 19437; Mature: 19437

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSTLLLPVILYSSATLAANMAGMNDKASMNDKASMTVKINESLPQGNGKALGTVTVTE
CCHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECC
TAYGLLFTPHLTGLAPGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPY
CCCEEEECCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCC
NDKGHLGDLPGLVVNADGTATYPVLAPRLKSLSEVKQHALMIHAGGDNYSDHPMPLGGGG
CCCCCCCCCCCEEEECCCCEECCHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCC
ARMACGVIE
CEEEEECCC
>Mature Secondary Structure
MKLSTLLLPVILYSSATLAANMAGMNDKASMNDKASMTVKINESLPQGNGKALGTVTVTE
CCHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECC
TAYGLLFTPHLTGLAPGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPY
CCCEEEECCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCC
NDKGHLGDLPGLVVNADGTATYPVLAPRLKSLSEVKQHALMIHAGGDNYSDHPMPLGGGG
CCCCCCCCCCCEEEECCCCEECCHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCC
ARMACGVIE
CEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9379906; 9391141; 11677609; 8869506; 10970746 [H]