Click here to switch to the map view.

The map label for this gene is yfmJ [H]

Identifier: 50841893

GI number: 50841893

Start: 455425

End: 456441

Strand: Direct

Name: yfmJ [H]

Synonym: PPA0411

Alternate gene names: 50841893

Gene position: 455425-456441 (Clockwise)

Preceding gene: 50841891

Following gene: 50841894

Centisome position: 17.79

GC content: 61.36

Gene sequence:

>1017_bases
ATGAGCACCACACGTCCCACGACCACCCGTGCCGTCCACCTGGCCTCGCGCCCGCACGGCGCACCGACCGAGGACAACTT
TCGCATTGAGGAGATCAGCCTCCCCGAGCTATCCGACGGTCAAATCCTGGTTGCCAATGACGTCATGTCGGTCGATCCGT
ACATGCGTGGTCGGATGAACGACGTCAAGTCCTATGTGCCGCCTTTCCACATTGACCGGCCCCTTGACGGGGGTGCCGTC
GGTACCGTCATCGAGTCGCGCAGCGAGGATATTCCGGAAGGTAGCCACGTCAGTCACCAGCTCGGGTGGAGAGAGCATGC
CGTCCTTAACGCCGGTGATGCACACATCATTGACACCGACATCGCCCCTGCGTCGGCATATCTGAGTGTGCTGGGAATGA
CTGGGCTCACCGCCTACGCTGGCCTGACTCGTGCCGCCGAGATGAAGGCTGGTGACGCCGTCTTCGTTTCTGGAGCTGCC
GGAGCCGTCGGATCGATGGTTGGTCAGCTAGCACGGCTGCTCGGTGCCTCTCGGGTCATTGGTTCGGCTGGCACTGACGC
TAAGGTTGCCCGGTTGCGTGAGCTCGGCTTCGACGCCGCTTTCAACTATCACGACGGTCCGAGTACCGAGTTGCTTGGGC
AGGCAGCCCCCGATGGCATTGACGTCTACTACGACAACGTTGGTGGCGATCATCTGGAGGCCGCCATTGATCATCTCAAC
ATCGACGGTCGGGTAGCGATGTGTGGGGCGATATCCCAGTACAACTCCGTCGAACCGCCTTGTGCCCCCCGAAATCTCGC
ATTGGCCATCGGGAAACGCCTCACCCTACGTGGCTTCGTCATCGCTAAGTATGCCGAGGAGGTCCGTCCGGAGTTCCAAC
AGCGGATGGCCGAGTGGCTGCCGGCCGACGAAATCCACTGGGACGAGACTTTTCGTGACGGCCTCGACGCGGCTCCACAA
GCGTTCATCGACATGCTCGACGGCGCCAACACCGGGAAGATGCTAGTCCGGTTGTGA

Upstream 100 bases:

>100_bases
ACCCGCGATCACCCTCCGCGGAATCGTCTGGTGTGACCGCGATGCTCGCGCGAGAGTTGGCAAGTAATGCTGTAGCGGTG
TCGAGAAGAGGAGTACCCCC

Downstream 100 bases:

>100_bases
GTTGCGGGGGCCAGCCAACTCGTTAGCACGTTCTGATTGTCAGCCCACGCTGATGGCCGTGACGAATGTCATGGCCAAGT
TGTGACATTGAAGGATGGTG

Product: zinc-binding dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MSTTRPTTTRAVHLASRPHGAPTEDNFRIEEISLPELSDGQILVANDVMSVDPYMRGRMNDVKSYVPPFHIDRPLDGGAV
GTVIESRSEDIPEGSHVSHQLGWREHAVLNAGDAHIIDTDIAPASAYLSVLGMTGLTAYAGLTRAAEMKAGDAVFVSGAA
GAVGSMVGQLARLLGASRVIGSAGTDAKVARLRELGFDAAFNYHDGPSTELLGQAAPDGIDVYYDNVGGDHLEAAIDHLN
IDGRVAMCGAISQYNSVEPPCAPRNLALAIGKRLTLRGFVIAKYAEEVRPEFQQRMAEWLPADEIHWDETFRDGLDAAPQ
AFIDMLDGANTGKMLVRL

Sequences:

>Translated_338_residues
MSTTRPTTTRAVHLASRPHGAPTEDNFRIEEISLPELSDGQILVANDVMSVDPYMRGRMNDVKSYVPPFHIDRPLDGGAV
GTVIESRSEDIPEGSHVSHQLGWREHAVLNAGDAHIIDTDIAPASAYLSVLGMTGLTAYAGLTRAAEMKAGDAVFVSGAA
GAVGSMVGQLARLLGASRVIGSAGTDAKVARLRELGFDAAFNYHDGPSTELLGQAAPDGIDVYYDNVGGDHLEAAIDHLN
IDGRVAMCGAISQYNSVEPPCAPRNLALAIGKRLTLRGFVIAKYAEEVRPEFQQRMAEWLPADEIHWDETFRDGLDAAPQ
AFIDMLDGANTGKMLVRL
>Mature_337_residues
STTRPTTTRAVHLASRPHGAPTEDNFRIEEISLPELSDGQILVANDVMSVDPYMRGRMNDVKSYVPPFHIDRPLDGGAVG
TVIESRSEDIPEGSHVSHQLGWREHAVLNAGDAHIIDTDIAPASAYLSVLGMTGLTAYAGLTRAAEMKAGDAVFVSGAAG
AVGSMVGQLARLLGASRVIGSAGTDAKVARLRELGFDAAFNYHDGPSTELLGQAAPDGIDVYYDNVGGDHLEAAIDHLNI
DGRVAMCGAISQYNSVEPPCAPRNLALAIGKRLTLRGFVIAKYAEEVRPEFQQRMAEWLPADEIHWDETFRDGLDAAPQA
FIDMLDGANTGKMLVRL

Specific function: Putative quinone oxidoreductase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226246682, Length=342, Percent_Identity=36.2573099415205, Blast_Score=218, Evalue=6e-57,
Organism=Homo sapiens, GI226246680, Length=342, Percent_Identity=36.2573099415205, Blast_Score=218, Evalue=6e-57,
Organism=Homo sapiens, GI22748929, Length=342, Percent_Identity=36.2573099415205, Blast_Score=218, Evalue=6e-57,
Organism=Homo sapiens, GI226059159, Length=333, Percent_Identity=36.3363363363363, Blast_Score=215, Evalue=6e-56,
Organism=Homo sapiens, GI226059133, Length=333, Percent_Identity=36.3363363363363, Blast_Score=215, Evalue=6e-56,
Organism=Homo sapiens, GI226056130, Length=296, Percent_Identity=36.4864864864865, Blast_Score=189, Evalue=3e-48,
Organism=Homo sapiens, GI28557745, Length=336, Percent_Identity=30.0595238095238, Blast_Score=102, Evalue=6e-22,
Organism=Escherichia coli, GI226510941, Length=344, Percent_Identity=40.9883720930233, Blast_Score=250, Evalue=8e-68,
Organism=Caenorhabditis elegans, GI133901712, Length=360, Percent_Identity=35.8333333333333, Blast_Score=198, Evalue=4e-51,
Organism=Caenorhabditis elegans, GI133901710, Length=360, Percent_Identity=35.8333333333333, Blast_Score=198, Evalue=4e-51,
Organism=Saccharomyces cerevisiae, GI6323504, Length=329, Percent_Identity=27.6595744680851, Blast_Score=112, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36188; Mature: 36057

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTRPTTTRAVHLASRPHGAPTEDNFRIEEISLPELSDGQILVANDVMSVDPYMRGRMN
CCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCEECCHHHHCCHH
DVKSYVPPFHIDRPLDGGAVGTVIESRSEDIPEGSHVSHQLGWREHAVLNAGDAHIIDTD
HHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCHHHHEEECCCCEEEECC
IAPASAYLSVLGMTGLTAYAGLTRAAEMKAGDAVFVSGAAGAVGSMVGQLARLLGASRVI
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
GSAGTDAKVARLRELGFDAAFNYHDGPSTELLGQAAPDGIDVYYDNVGGDHLEAAIDHLN
CCCCCCHHHHHHHHHCCCCEECCCCCCCHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCC
IDGRVAMCGAISQYNSVEPPCAPRNLALAIGKRLTLRGFVIAKYAEEVRPEFQQRMAEWL
CCCCEEEEEHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHC
PADEIHWDETFRDGLDAAPQAFIDMLDGANTGKMLVRL
CCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEC
>Mature Secondary Structure 
STTRPTTTRAVHLASRPHGAPTEDNFRIEEISLPELSDGQILVANDVMSVDPYMRGRMN
CCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCEECCHHHHCCHH
DVKSYVPPFHIDRPLDGGAVGTVIESRSEDIPEGSHVSHQLGWREHAVLNAGDAHIIDTD
HHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCHHHHEEECCCCEEEECC
IAPASAYLSVLGMTGLTAYAGLTRAAEMKAGDAVFVSGAAGAVGSMVGQLARLLGASRVI
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
GSAGTDAKVARLRELGFDAAFNYHDGPSTELLGQAAPDGIDVYYDNVGGDHLEAAIDHLN
CCCCCCHHHHHHHHHCCCCEECCCCCCCHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCC
IDGRVAMCGAISQYNSVEPPCAPRNLALAIGKRLTLRGFVIAKYAEEVRPEFQQRMAEWL
CCCCEEEEEHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHC
PADEIHWDETFRDGLDAAPQAFIDMLDGANTGKMLVRL
CCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]