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The map label for this gene is araQ [H]

Identifier: 50841883

GI number: 50841883

Start: 446796

End: 447677

Strand: Direct

Name: araQ [H]

Synonym: PPA0400

Alternate gene names: 50841883

Gene position: 446796-447677 (Clockwise)

Preceding gene: 50841882

Following gene: 50841884

Centisome position: 17.45

GC content: 59.64

Gene sequence:

>882_bases
GTGAGTACGGGGTCCGAACTCTCCGCTGTAGAGGTGGCGGCCCTTGCCAAGCGGGGCGACACCGTCTCGCAGCGGCGCTT
CGTCGGGGTGCACATCCTTCTGCTGCTCGGCGGAGTGCTCATGGTGTTCCCATTCGTGTACCAGATCCTCATGTCCTTGT
CGACGAACATGGAGATCCAGTCCGTCCCGCCGAAGCTCATTCCCGACCGCTGGCAGTTCCACAATTACACCGAGGTGTTT
ACCCGTCTTCCTTTCCTCAAACAGTTTGGGGTGTCGGTGACGATCACGGTGTTGAGAACCGTCGTCCAACTGATTCTGTG
CTCGATGGGGGGATATGCCTTCGCGCGAATGAAGTTCGGTGGCAAGTCGGTTCTCTTCGGGTTCGTCCTTGCAATCCTCA
TGGTGCCCGGGCAGTCGTATCTCATCGGCCAGTACGAGATCATTCGCGAACTGGGATTGTTGGAGACGCCATGGGGCATC
GTCCTTCCTGGCTTCTTCTCGGCTTTCGGAGTGTTTCTCATGCGGCAGTCCTTCATGAGCCTGCCGGCCGAGCTGGAGGA
GGCCGCAAGGCTCGATGGCTGCAATCCGTGGCAGACGTTTTGGCGAGTCATGGTGCCCGTCGTCAAACCAGGCTTGTTCG
CGGTCATGATCACGACCGTGTTGTGGTCCTGGAATGACTTGCTGTGGCCATTGATTGTCACGGCGCGGGAGGAGTCGATG
CCGTTGAGCGTTGGCATCGCGACCCTTGCAGGGCAGCACTCGAGCGAGTTCGCGCTCATGATGGCGGCCTCCGTGATGGC
CATGGCGCCGATCTTCCTCCTCTTCTTCTCGATGCAACGCAAGGTCATCGAGGGGCTCGCCAGTTCGGGGCTCAAGGGTT
GA

Upstream 100 bases:

>100_bases
GGGCTCGGTGCCGCCGTGGCGATCGTTATCTTTGCTCTCGTCGCCATCGTGACTCTCGCCCAGTTCCTGGGGCAGAAGAG
ATGGGTGAACTATGTCTGAG

Downstream 100 bases:

>100_bases
GCGCGGGTCGCTGGTTGTCGGGGGCTTCTGCCGGCATTGCCAAGACGTTTCCGGGGAAGTGGTTCGAGCGAGCCGATGTG
GCTCATGTGGCGACGGATGG

Product: putative transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSTGSELSAVEVAALAKRGDTVSQRRFVGVHILLLLGGVLMVFPFVYQILMSLSTNMEIQSVPPKLIPDRWQFHNYTEVF
TRLPFLKQFGVSVTITVLRTVVQLILCSMGGYAFARMKFGGKSVLFGFVLAILMVPGQSYLIGQYEIIRELGLLETPWGI
VLPGFFSAFGVFLMRQSFMSLPAELEEAARLDGCNPWQTFWRVMVPVVKPGLFAVMITTVLWSWNDLLWPLIVTAREESM
PLSVGIATLAGQHSSEFALMMAASVMAMAPIFLLFFSMQRKVIEGLASSGLKG

Sequences:

>Translated_293_residues
MSTGSELSAVEVAALAKRGDTVSQRRFVGVHILLLLGGVLMVFPFVYQILMSLSTNMEIQSVPPKLIPDRWQFHNYTEVF
TRLPFLKQFGVSVTITVLRTVVQLILCSMGGYAFARMKFGGKSVLFGFVLAILMVPGQSYLIGQYEIIRELGLLETPWGI
VLPGFFSAFGVFLMRQSFMSLPAELEEAARLDGCNPWQTFWRVMVPVVKPGLFAVMITTVLWSWNDLLWPLIVTAREESM
PLSVGIATLAGQHSSEFALMMAASVMAMAPIFLLFFSMQRKVIEGLASSGLKG
>Mature_292_residues
STGSELSAVEVAALAKRGDTVSQRRFVGVHILLLLGGVLMVFPFVYQILMSLSTNMEIQSVPPKLIPDRWQFHNYTEVFT
RLPFLKQFGVSVTITVLRTVVQLILCSMGGYAFARMKFGGKSVLFGFVLAILMVPGQSYLIGQYEIIRELGLLETPWGIV
LPGFFSAFGVFLMRQSFMSLPAELEEAARLDGCNPWQTFWRVMVPVVKPGLFAVMITTVLWSWNDLLWPLIVTAREESMP
LSVGIATLAGQHSSEFALMMAASVMAMAPIFLLFFSMQRKVIEGLASSGLKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=283, Percent_Identity=27.9151943462898, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1789860, Length=267, Percent_Identity=26.9662921348315, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790464, Length=270, Percent_Identity=27.7777777777778, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32476; Mature: 32345

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGSELSAVEVAALAKRGDTVSQRRFVGVHILLLLGGVLMVFPFVYQILMSLSTNMEIQ
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
SVPPKLIPDRWQFHNYTEVFTRLPFLKQFGVSVTITVLRTVVQLILCSMGGYAFARMKFG
CCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHEEEECCC
GKSVLFGFVLAILMVPGQSYLIGQYEIIRELGLLETPWGIVLPGFFSAFGVFLMRQSFMS
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LPAELEEAARLDGCNPWQTFWRVMVPVVKPGLFAVMITTVLWSWNDLLWPLIVTAREESM
CCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PLSVGIATLAGQHSSEFALMMAASVMAMAPIFLLFFSMQRKVIEGLASSGLKG
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STGSELSAVEVAALAKRGDTVSQRRFVGVHILLLLGGVLMVFPFVYQILMSLSTNMEIQ
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
SVPPKLIPDRWQFHNYTEVFTRLPFLKQFGVSVTITVLRTVVQLILCSMGGYAFARMKFG
CCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHEEEECCC
GKSVLFGFVLAILMVPGQSYLIGQYEIIRELGLLETPWGIVLPGFFSAFGVFLMRQSFMS
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LPAELEEAARLDGCNPWQTFWRVMVPVVKPGLFAVMITTVLWSWNDLLWPLIVTAREESM
CCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PLSVGIATLAGQHSSEFALMMAASVMAMAPIFLLFFSMQRKVIEGLASSGLKG
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]