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The map label for this gene is ydeB [H]

Identifier: 50841843

GI number: 50841843

Start: 406490

End: 406975

Strand: Reverse

Name: ydeB [H]

Synonym: PPA0357

Alternate gene names: 50841843

Gene position: 406975-406490 (Counterclockwise)

Preceding gene: 50841845

Following gene: 50841841

Centisome position: 15.9

GC content: 53.91

Gene sequence:

>486_bases
ATGACTTTCAACGTTGGTGAAACCGTTGTCTACCCGAATCATGGCGCTGCCGTGATCGAAGATATCGAGACTCGCACTAT
TAAAGGCGAGGAAAAGCTCTACCTCGTTCTGAGGATTCTCGGACAAAATGATTTGGTTGTGCGAGTGCCAGCCAGCAATC
TTGACCTTGTCGGCGTTCGTGACGTCGTTGACGACGAGGGCCTCGAAAATGTTTTCGAGGTCCTTCGTAAGACCAATGTT
GAGGAGCCATCCAACTGGTCTCGCCGTTACAAGGCCAACCTTGAAAAACTCCATTCTGGCAACGTTCTCAAAGTTGCCGA
GGTCGTCCGTGACCTGTGGCGCCGCGAACGTGACCGCGGTCTGTCCGCCGGTGAGAAGCGGATGCTCTCGAAAGCTCGTC
AGATCCTGGTGTCTGAGTTAGCCCTCGCCAAAAAGGTAGCTGATGACCGGGCTGAGGAAATGCTCGACGAGGTTCTCGCC
TCCTGA

Upstream 100 bases:

>100_bases
GTCGGCGCACCGTAACGCTATTGAGGACGTTCGTACAAAATTAATATTGACCTCAACTATTATTATGTGATATACTTAAC
TCCCGAAAGGGGCCGCATAA

Downstream 100 bases:

>100_bases
TTCATTCTCACTGCGAAAACGGGGATTCACCACACTTCGGGTGAATCCCCGTTTCTCATGCCTTGTCGCCTGTCACGGAA
TCGTCACGATTTCAATGCGT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MTFNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRILGQNDLVVRVPASNLDLVGVRDVVDDEGLENVFEVLRKTNV
EEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRGLSAGEKRMLSKARQILVSELALAKKVADDRAEEMLDEVLA
S

Sequences:

>Translated_161_residues
MTFNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRILGQNDLVVRVPASNLDLVGVRDVVDDEGLENVFEVLRKTNV
EEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRGLSAGEKRMLSKARQILVSELALAKKVADDRAEEMLDEVLA
S
>Mature_160_residues
TFNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRILGQNDLVVRVPASNLDLVGVRDVVDDEGLENVFEVLRKTNVE
EPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRGLSAGEKRMLSKARQILVSELALAKKVADDRAEEMLDEVLAS

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 18210; Mature: 18079

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRILGQNDLVVRVPASNLDLVGVR
CCCCCCCEEEECCCCCHHHHHHHHHCCCCCHHHHHEEHHHCCCCEEEEECCCCCCEEEHH
DVVDDEGLENVFEVLRKTNVEEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRG
HHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
LSAGEKRMLSKARQILVSELALAKKVADDRAEEMLDEVLAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TFNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRILGQNDLVVRVPASNLDLVGVR
CCCCCCEEEECCCCCHHHHHHHHHCCCCCHHHHHEEHHHCCCCEEEEECCCCCCEEEHH
DVVDDEGLENVFEVLRKTNVEEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRG
HHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
LSAGEKRMLSKARQILVSELALAKKVADDRAEEMLDEVLAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]