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The map label for this gene is ydeM [C]

Identifier: 50841594

GI number: 50841594

Start: 124075

End: 125169

Strand: Reverse

Name: ydeM [C]

Synonym: PPA0103

Alternate gene names: 50841594

Gene position: 125169-124075 (Counterclockwise)

Preceding gene: 50841595

Following gene: 50841593

Centisome position: 4.89

GC content: 66.85

Gene sequence:

>1095_bases
ATGACCGTGCGCTATCTCGTCTTGTGGCCGACCGCGGCCTGCGATCTCACTTGTCCCTACTGTTACCGCCGCGACCGTCG
AGGCGGACGGATGCCCGTTGAGGTGGCAGACACCGCCTTGGACCTCGTCGCCGAGGGTGTACGCACCACCGGGCAGCCCG
CCCACGTCCAACTGGCCGGCGGGGAGCCGACTCTGGTGCCCTCCCTCATTGAGCATGTCGCCAAGCGTGTTGTGGAAATT
CGGTGGGGAAAGGTCACCTGCGGCATCCAGACCAATGCCGCCCGCCTCGACGGCGACATCATCGCCATGCTGAAACGCCA
CAGCGTCCGAGTCGGGGTGAGCGTCGACGGGCCACCCCCAGTGCACGAGAAGACGCGCGGTTCGGCGGCGCAGACTTTCC
GGGGCCTGCTCGCCCTCGCTCACGCCGACATCCCGGTGCGGGTGACAACAGTGCTGTCAGCCCTCAACGTCGATCACCTA
GACGGGCTGGCCGTCACTCTCGCCGCGCTTCCCAACGTCACCGGATTCGGACTCGACCCGCTTGTGGCAATCGGGAGCGC
AACCGGGCGAGATGAACTCGTGCCCTGCGACGAGGCCGTCATCAACGGAATCACCACGCTCCACCGGCGGCTGGCACAGA
TCAACGCGCTGCGCGCCACACCCTTGCGCTGGCGGGAGTTGGAGACCGTCAGGACTGCTCTCCGCCGTGGTCCTGTGCCC
ACGACCAGCGCCGTCGACCCCGCGGGCCGCACTCTGCTCCCGGTGGCGAACCACCCCTACTGCCATGCGGCGGTCGGGGA
ATCAATGGCGGTCGCACCCGATGGCAGCGTCTACCCCTGTTCTCAAGCTGTCGGAGATATGGCTTCCCGGGCGGGAACCG
TCCATAGCATCGACTGGGAAAGCTTGCGACGGCGTTTCTCGCAAGATCGCCACACCCTGCGCGGACCCTGCCACCGCTGC
GCCTTGGCCGGACGATGCCCCGGCGATTGCCCATCCCGAGTAGAGGCCAATGCCCTTGCCGACCCGGAACAGCGCCGGAC
TCCCCTCACCTGCCTCATCGACAGCACTCTCGCCCGTCTGGAAAGTGCATCATGA

Upstream 100 bases:

>100_bases
GAGTCACCGATGAAGGCTGGGCGGTCGACGACTGTGTACTACCCACCCTCTCCCAGCTCCACGAGCATCTCATCGGTCGT
CACAGGGAGCGTGCCCGGTC

Downstream 100 bases:

>100_bases
CCACCCTGAGCTTCTTCTCGGCCACCGGCGGCGAACTCACCCTCGTCAGCCAAGCCTTGTCACGGCTACGCACTCGTGGT
CTCGACATCACCCTCTTCGG

Product: radical SAM superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 363

Protein sequence:

>364_residues
MTVRYLVLWPTAACDLTCPYCYRRDRRGGRMPVEVADTALDLVAEGVRTTGQPAHVQLAGGEPTLVPSLIEHVAKRVVEI
RWGKVTCGIQTNAARLDGDIIAMLKRHSVRVGVSVDGPPPVHEKTRGSAAQTFRGLLALAHADIPVRVTTVLSALNVDHL
DGLAVTLAALPNVTGFGLDPLVAIGSATGRDELVPCDEAVINGITTLHRRLAQINALRATPLRWRELETVRTALRRGPVP
TTSAVDPAGRTLLPVANHPYCHAAVGESMAVAPDGSVYPCSQAVGDMASRAGTVHSIDWESLRRRFSQDRHTLRGPCHRC
ALAGRCPGDCPSRVEANALADPEQRRTPLTCLIDSTLARLESAS

Sequences:

>Translated_364_residues
MTVRYLVLWPTAACDLTCPYCYRRDRRGGRMPVEVADTALDLVAEGVRTTGQPAHVQLAGGEPTLVPSLIEHVAKRVVEI
RWGKVTCGIQTNAARLDGDIIAMLKRHSVRVGVSVDGPPPVHEKTRGSAAQTFRGLLALAHADIPVRVTTVLSALNVDHL
DGLAVTLAALPNVTGFGLDPLVAIGSATGRDELVPCDEAVINGITTLHRRLAQINALRATPLRWRELETVRTALRRGPVP
TTSAVDPAGRTLLPVANHPYCHAAVGESMAVAPDGSVYPCSQAVGDMASRAGTVHSIDWESLRRRFSQDRHTLRGPCHRC
ALAGRCPGDCPSRVEANALADPEQRRTPLTCLIDSTLARLESAS
>Mature_363_residues
TVRYLVLWPTAACDLTCPYCYRRDRRGGRMPVEVADTALDLVAEGVRTTGQPAHVQLAGGEPTLVPSLIEHVAKRVVEIR
WGKVTCGIQTNAARLDGDIIAMLKRHSVRVGVSVDGPPPVHEKTRGSAAQTFRGLLALAHADIPVRVTTVLSALNVDHLD
GLAVTLAALPNVTGFGLDPLVAIGSATGRDELVPCDEAVINGITTLHRRLAQINALRATPLRWRELETVRTALRRGPVPT
TSAVDPAGRTLLPVANHPYCHAAVGESMAVAPDGSVYPCSQAVGDMASRAGTVHSIDWESLRRRFSQDRHTLRGPCHRCA
LAGRCPGDCPSRVEANALADPEQRRTPLTCLIDSTLARLESAS

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 39005; Mature: 38874

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVRYLVLWPTAACDLTCPYCYRRDRRGGRMPVEVADTALDLVAEGVRTTGQPAHVQLAG
CEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECC
GEPTLVPSLIEHVAKRVVEIRWGKVTCGIQTNAARLDGDIIAMLKRHSVRVGVSVDGPPP
CCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHCHHHHHHHHHCCEEEEEEECCCCC
VHEKTRGSAAQTFRGLLALAHADIPVRVTTVLSALNVDHLDGLAVTLAALPNVTGFGLDP
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHCHHHHHHHHCCCCCCCCCCH
LVAIGSATGRDELVPCDEAVINGITTLHRRLAQINALRATPLRWRELETVRTALRRGPVP
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
TTSAVDPAGRTLLPVANHPYCHAAVGESMAVAPDGSVYPCSQAVGDMASRAGTVHSIDWE
CCCCCCCCCCEEEECCCCCEEEHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCEEECCHH
SLRRRFSQDRHTLRGPCHRCALAGRCPGDCPSRVEANALADPEQRRTPLTCLIDSTLARL
HHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHH
ESAS
HCCC
>Mature Secondary Structure 
TVRYLVLWPTAACDLTCPYCYRRDRRGGRMPVEVADTALDLVAEGVRTTGQPAHVQLAG
EEEEEEEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECC
GEPTLVPSLIEHVAKRVVEIRWGKVTCGIQTNAARLDGDIIAMLKRHSVRVGVSVDGPPP
CCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHCHHHHHHHHHCCEEEEEEECCCCC
VHEKTRGSAAQTFRGLLALAHADIPVRVTTVLSALNVDHLDGLAVTLAALPNVTGFGLDP
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHCHHHHHHHHCCCCCCCCCCH
LVAIGSATGRDELVPCDEAVINGITTLHRRLAQINALRATPLRWRELETVRTALRRGPVP
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
TTSAVDPAGRTLLPVANHPYCHAAVGESMAVAPDGSVYPCSQAVGDMASRAGTVHSIDWE
CCCCCCCCCCEEEECCCCCEEEHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCEEECCHH
SLRRRFSQDRHTLRGPCHRCALAGRCPGDCPSRVEANALADPEQRRTPLTCLIDSTLARL
HHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHH
ESAS
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]