Click here to switch to the map view.

The map label for this gene is 50365292

Identifier: 50365292

GI number: 50365292

Start: 559864

End: 560484

Strand: Reverse

Name: 50365292

Synonym: Mfl475

Alternate gene names: NA

Gene position: 560484-559864 (Counterclockwise)

Preceding gene: 50365293

Following gene: 50365291

Centisome position: 70.66

GC content: 28.82

Gene sequence:

>621_bases
ATGAAATATTACGCTGTTAAACAAGGAAGAAATATTGGTGTATATGAAACTTGAGAAGAATGTAAAATTCAAGTTGAAGG
ATATACTAATGCTGTTTATAAATCTTTTTCAAGCAAAGCAGATGCTGAAGCCTTTATTAAGGGCGGACAAACATTATCTA
AACCTAAACAAAAAATTGAAATAGAAGAAAATGCTGCAGTTGCATATAGTGATGGTAGTTTTATTAAAGACAATAATACT
TATTCATATGGTGCAGTTGTAATGTGACAAAATAAAGAGTTTCATTTTTCAAAAAGATATCGTGATGATGAATTAAAATC
AATGTGAAATGTGAGTGGAGAACTACAAGGAGCAAAAAGGGTGATGTTATTCGCGTATGCTAATAACATTAAGAAATTAT
ATTTATATCATGATTATGAAGGTATCGCTAAGTGAGCAAACCATGAATGAAAAGCAAAATCTGATGAAGGTAATGAATAT
ATTAAATTTGTTGATCAAATCAGAACAAAAGTAGAATTAGAATTTATTTGAGTAAAAGGTCATAGTAATGATTATTACAA
TGATTTAGCTGATCAATTAGCAGCTAATGCAACATTTGAAGAATACGTTAAGGAGGTTTAA

Upstream 100 bases:

>100_bases
GATAACAAAACTGAAAAATGTTTTAACTGTAACAAAGACACAACATTAAAAGTTTATTTTGCAAGAGCTTATTAATTAAT
AAAAGTAAGGAGGTTTAGAA

Downstream 100 bases:

>100_bases
AGCATGAGAAAATTTCAATTGCAAATGATTGATGGGAAAGAATTAATTAATTTTGAATGAAAAACTTCTAAAAAACCTAT
TGCCATTATTCAAGTTGTAC

Product: ribonuclease HI

Products: NA

Alternate protein names: Ribonuclease HI; Ribonuclease H-Related Protein; RNAse H Family Protein; Ribonuclease; Ribonuclease H1-Like

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKYYAVKQGRNIGVYETWEECKIQVEGYTNAVYKSFSSKADAEAFIKGGQTLSKPKQKIEIEENAAVAYSDGSFIKDNNT
YSYGAVVMWQNKEFHFSKRYRDDELKSMWNVSGELQGAKRVMLFAYANNIKKLYLYHDYEGIAKWANHEWKAKSDEGNEY
IKFVDQIRTKVELEFIWVKGHSNDYYNDLADQLAANATFEEYVKEV

Sequences:

>Translated_206_residues
MKYYAVKQGRNIGVYET*EECKIQVEGYTNAVYKSFSSKADAEAFIKGGQTLSKPKQKIEIEENAAVAYSDGSFIKDNNT
YSYGAVVM*QNKEFHFSKRYRDDELKSM*NVSGELQGAKRVMLFAYANNIKKLYLYHDYEGIAK*ANHE*KAKSDEGNEY
IKFVDQIRTKVELEFI*VKGHSNDYYNDLADQLAANATFEEYVKEV
>Mature_206_residues
MKYYAVKQGRNIGVYET*EECKIQVEGYTNAVYKSFSSKADAEAFIKGGQTLSKPKQKIEIEENAAVAYSDGSFIKDNNT
YSYGAVVM*QNKEFHFSKRYRDDELKSM*NVSGELQGAKRVMLFAYANNIKKLYLYHDYEGIAK*ANHE*KAKSDEGNEY
IKFVDQIRTKVELEFI*VKGHSNDYYNDLADQLAANATFEEYVKEV

Specific function: Unknown

COG id: COG3341

COG function: function code R; Predicted double-stranded RNA/RNA-DNA hybrid binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22820; Mature: 22820

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYYAVKQGRNIGVYETEECKIQVEGYTNAVYKSFSSKADAEAFIKGGQTLSKPKQKIEI
CCEEEECCCCCCCCEECCCCEEEECCCHHHHHHHHCCCCCHHHHHCCCCCCCCCHHEEEE
EENAAVAYSDGSFIKDNNTYSYGAVVMQNKEFHFSKRYRDDELKSMNVSGELQGAKRVML
ECCCEEEECCCCEEECCCCEEEEEEEEECCCCCHHHHCCCCHHHCCCCCCCCCCCCEEEE
FAYANNIKKLYLYHDYEGIAKANHEKAKSDEGNEYIKFVDQIRTKVELEFIVKGHSNDYY
EEEECCCEEEEEEECCCCHHHCCCHHCCCCCCHHHHHHHHHHHHHEEEEEEEECCCCCHH
NDLADQLAANATFEEYVKEV
HHHHHHHHCCCCHHHHHHCC
>Mature Secondary Structure
MKYYAVKQGRNIGVYETEECKIQVEGYTNAVYKSFSSKADAEAFIKGGQTLSKPKQKIEI
CCEEEECCCCCCCCEECCCCEEEECCCHHHHHHHHCCCCCHHHHHCCCCCCCCCHHEEEE
EENAAVAYSDGSFIKDNNTYSYGAVVMQNKEFHFSKRYRDDELKSMNVSGELQGAKRVML
ECCCEEEECCCCEEECCCCEEEEEEEEECCCCCHHHHCCCCHHHCCCCCCCCCCCCEEEE
FAYANNIKKLYLYHDYEGIAKANHEKAKSDEGNEYIKFVDQIRTKVELEFIVKGHSNDYY
EEEECCCEEEEEEECCCCHHHCCCHHCCCCCCHHHHHHHHHHHHHEEEEEEEECCCCCHH
NDLADQLAANATFEEYVKEV
HHHHHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA