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The map label for this gene is ysgA [H]

Identifier: 50365074

GI number: 50365074

Start: 286541

End: 287296

Strand: Direct

Name: ysgA [H]

Synonym: Mfl258

Alternate gene names: 50365074

Gene position: 286541-287296 (Clockwise)

Preceding gene: 50365073

Following gene: 50365075

Centisome position: 36.12

GC content: 23.68

Gene sequence:

>756_bases
ATGGAAAAAATAACATCAACATCAAATAAAAAAATCAAAGATTTAATCAAATTAAGAGATGATAAAAAATTTCAAACAGT
TGAAAATCTTTTTGTAATCGAAGGATTGCACATGGTTAATGAAGCCATTAAAAGAAATATTGTCAAAACTATATTTTTGG
AAGAAAAAATGTTTAGTAAAATTTATGATATCAATAATTTTGAATGCGTTTTAATTTCAGAAAATGTTTCAAATAAAATA
TCTTCAACTAAAACTAGTCAAGGAATTTTTGCAACTTGTATATTAGAAGACCAAAAAATCAACATGTTGGAAAATATATT
AATTTTAGATCAAATTCAAGATCCTGGTAATATGGGAACTTTAATTAGAAGTGCAGCTTCTTTTGAATTTCAGACTGTAG
TTGCTTCAAATAATTCTGTTAGTTTTTATAATCCTAAAGTTTTGAGATCAACACAAGGAAACTTATTTTCAATAAATTTA
ATAAATGATGATTTAATTAAAACTATCGATGAATTAAAACAAAATAATTACCAAATCATAGGAACTGTTTTGAATGATGA
AACAAAATTTATGAAACAAATAGAATTTAGCAAAAATCAAAAGTATGCGTTAATAATAGGTAATGAAGCAAAGGGCATAA
GTGATGAACTTAAACCTTTAATAGACATTAATTTAAACATAGAAATGAGCAATGAAGTTGAATCATTAAATGCAGCAATT
GCAGGTTCAATTATTATGTATAACATTAAAAAATAA

Upstream 100 bases:

>100_bases
CAAATTGCAAAAGTGCAAAATTATTCTGAAGAAGATTTAATTAAAACTTACAAAGCTAAACATGAAAAAAACCAACAAAG
ACAAGTAGAAAATTATTAAA

Downstream 100 bases:

>100_bases
ATAAATTTAATTTTTGTATTGCCTTATAGTAGGTTGAATGTTTTAAAATTAAATTGCAATCAAATAAAGGAGAATTTAAT
ATGGAAAAATTCAAAGCAAT

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MEKITSTSNKKIKDLIKLRDDKKFQTVENLFVIEGLHMVNEAIKRNIVKTIFLEEKMFSKIYDINNFECVLISENVSNKI
SSTKTSQGIFATCILEDQKINMLENILILDQIQDPGNMGTLIRSAASFEFQTVVASNNSVSFYNPKVLRSTQGNLFSINL
INDDLIKTIDELKQNNYQIIGTVLNDETKFMKQIEFSKNQKYALIIGNEAKGISDELKPLIDINLNIEMSNEVESLNAAI
AGSIIMYNIKK

Sequences:

>Translated_251_residues
MEKITSTSNKKIKDLIKLRDDKKFQTVENLFVIEGLHMVNEAIKRNIVKTIFLEEKMFSKIYDINNFECVLISENVSNKI
SSTKTSQGIFATCILEDQKINMLENILILDQIQDPGNMGTLIRSAASFEFQTVVASNNSVSFYNPKVLRSTQGNLFSINL
INDDLIKTIDELKQNNYQIIGTVLNDETKFMKQIEFSKNQKYALIIGNEAKGISDELKPLIDINLNIEMSNEVESLNAAI
AGSIIMYNIKK
>Mature_251_residues
MEKITSTSNKKIKDLIKLRDDKKFQTVENLFVIEGLHMVNEAIKRNIVKTIFLEEKMFSKIYDINNFECVLISENVSNKI
SSTKTSQGIFATCILEDQKINMLENILILDQIQDPGNMGTLIRSAASFEFQTVVASNNSVSFYNPKVLRSTQGNLFSINL
INDDLIKTIDELKQNNYQIIGTVLNDETKFMKQIEFSKNQKYALIIGNEAKGISDELKPLIDINLNIEMSNEVESLNAAI
AGSIIMYNIKK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=156, Percent_Identity=28.8461538461538, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28473; Mature: 28473

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKITSTSNKKIKDLIKLRDDKKFQTVENLFVIEGLHMVNEAIKRNIVKTIFLEEKMFSK
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYDINNFECVLISENVSNKISSTKTSQGIFATCILEDQKINMLENILILDQIQDPGNMGT
HHCCCCEEEEEEECCCCCHHHCCCCCCCEEEEEEECCCHHHHHHHHHEEECCCCCCCHHH
LIRSAASFEFQTVVASNNSVSFYNPKVLRSTQGNLFSINLINDDLIKTIDELKQNNYQII
HHHHHCCCEEEEEEECCCEEEEECCCEEECCCCCEEEEEECCHHHHHHHHHHHCCCEEEE
GTVLNDETKFMKQIEFSKNQKYALIIGNEAKGISDELKPLIDINLNIEMSNEVESLNAAI
EEEECCHHHHHHHHHCCCCCEEEEEECCCCCCCCHHCCEEEEEEEEEEECCHHHHHHHHH
AGSIIMYNIKK
CCEEEEEEECC
>Mature Secondary Structure
MEKITSTSNKKIKDLIKLRDDKKFQTVENLFVIEGLHMVNEAIKRNIVKTIFLEEKMFSK
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYDINNFECVLISENVSNKISSTKTSQGIFATCILEDQKINMLENILILDQIQDPGNMGT
HHCCCCEEEEEEECCCCCHHHCCCCCCCEEEEEEECCCHHHHHHHHHEEECCCCCCCHHH
LIRSAASFEFQTVVASNNSVSFYNPKVLRSTQGNLFSINLINDDLIKTIDELKQNNYQII
HHHHHCCCEEEEEEECCCEEEEECCCEEECCCCCEEEEEECCHHHHHHHHHHHCCCEEEE
GTVLNDETKFMKQIEFSKNQKYALIIGNEAKGISDELKPLIDINLNIEMSNEVESLNAAI
EEEECCHHHHHHHHHCCCCCEEEEEECCCCCCCCHHCCEEEEEEEEEEECCHHHHHHHHH
AGSIIMYNIKK
CCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]