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The map label for this gene is yddM [C]

Identifier: 50085292

GI number: 50085292

Start: 2156963

End: 2157292

Strand: Reverse

Name: yddM [C]

Synonym: ACIAD2181

Alternate gene names: 50085292

Gene position: 2157292-2156963 (Counterclockwise)

Preceding gene: 50085293

Following gene: 50085291

Centisome position: 59.95

GC content: 43.03

Gene sequence:

>330_bases
ATGGGTCAAATGTTTAATCCGCCACATCCTGGTGAAACTTTACGTGAAGATGTATTACCTGCGTTTAATTTGACTGTTAC
AGAAGCAGCGAATCAATTGGGTGTATCTAGAGTTACGTTGTCACGAGTGCTTAATGGGACTTCCGCAATTTCTCCTGAGA
TGGCATTACGTATTGAAGAATGGTTAGGCGTTGAAAACGGTGGACGTGCTGATCTCTGGTTAGGTATGCAAACCAGTTAT
GATCTTTGGAAGGCCAGAGAACGTGTTCATCAGCAACCTTTGAGTGTTCGTTCCGTAAAGCATAAAAGTACAGAGATGGC
TTTACGCTGA

Upstream 100 bases:

>100_bases
TTCTATTTCAGTGAATGGAAACTGGCGTTTAACGTTCTATTTTGATCATGGTGATGCTGTATTAGTTGACTATCAGGACT
ATCATTAAGAGAGGTATATC

Downstream 100 bases:

>100_bases
TAGCTCTTGACCTTGATCAAGGCAAGTGTTATTTTTACCTTACAGTGGTCGAAGTGTAAGTAAATGACCAATGATTAAAG
CTCGCTAATTGCGGGCTTTA

Product: proteic killer active protein

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MGQMFNPPHPGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEEWLGVENGGRADLWLGMQTSY
DLWKARERVHQQPLSVRSVKHKSTEMALR

Sequences:

>Translated_109_residues
MGQMFNPPHPGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEEWLGVENGGRADLWLGMQTSY
DLWKARERVHQQPLSVRSVKHKSTEMALR
>Mature_108_residues
GQMFNPPHPGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEEWLGVENGGRADLWLGMQTSYD
LWKARERVHQQPLSVRSVKHKSTEMALR

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 12212; Mature: 12081

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQMFNPPHPGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEE
CCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHH
WLGVENGGRADLWLGMQTSYDLWKARERVHQQPLSVRSVKHKSTEMALR
HCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHCCHHHCCC
>Mature Secondary Structure 
GQMFNPPHPGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEE
CCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHH
WLGVENGGRADLWLGMQTSYDLWKARERVHQQPLSVRSVKHKSTEMALR
HCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7937823 [H]