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The map label for this gene is bkdR [H]

Identifier: 50085181

GI number: 50085181

Start: 2040648

End: 2041121

Strand: Reverse

Name: bkdR [H]

Synonym: ACIAD2053

Alternate gene names: 50085181

Gene position: 2041121-2040648 (Counterclockwise)

Preceding gene: 50085183

Following gene: 50085174

Centisome position: 56.72

GC content: 34.6

Gene sequence:

>474_bases
GTGATGGAGCTTGATCGTTACGATAAACAGATTCTCGAAATTTTGACTCACGAAGATCTCAATCTGAATGAGCTATCGGA
AAGAATTAATCTATCGGTAAGCTCGGTACATCGTCGGATCAAGCACTTGATTGAATCTAATATCATGAGTCATTTAAAAC
GTGATATTAATTTCACTAAGCTTGGGTTTAGTTTGCATATTTTGCTTCAAGTGTCATTAAGCAAGCATGACACAGAGACC
TTCGACAAATTTTTAGCTGAATTGGAAGACATTCCAGAAGTCACTAATGCTTTTTTGGTAACTGGGCAGAGTGCCGATTT
TATTCTAGAGTTGGTAGCGCGAGACATGGATAATTACAGTGATATTTTGTTACGCAGAATAGGTAAGATTGATAATGTCG
TCGCATTACATTCAAGCTTTGTTATTAAAGAATATAATGTGTTTAATTGCTATAAACTTTTAAATAAAGTATAA

Upstream 100 bases:

>100_bases
CTTGATAAAGATAAGCGTACATATGATCGATAACTTTATGTTTTGTGAATGTGCCTCAACTACAATACAATGAGTTTTTA
ATTGGTAGAGAAGTAGGGAT

Downstream 100 bases:

>100_bases
AAAACGCGCATCAAGCGCGTTTCTTATGTAACTTTTAGCAAATATTAGGCATCAAGCTGTGCCAATACTTCTTCTGAAAA
TTCGACGTTGGTATAAACGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MMELDRYDKQILEILTHEDLNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLGFSLHILLQVSLSKHDTET
FDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYSDILLRRIGKIDNVVALHSSFVIKEYNVFNCYKLLNKV

Sequences:

>Translated_157_residues
MMELDRYDKQILEILTHEDLNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLGFSLHILLQVSLSKHDTET
FDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYSDILLRRIGKIDNVVALHSSFVIKEYNVFNCYKLLNKV
>Mature_157_residues
MMELDRYDKQILEILTHEDLNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLGFSLHILLQVSLSKHDTET
FDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYSDILLRRIGKIDNVVALHSSFVIKEYNVFNCYKLLNKV

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=142, Percent_Identity=23.2394366197183, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 18290; Mature: 18290

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMELDRYDKQILEILTHEDLNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTK
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LGFSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYS
HHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHH
DILLRRIGKIDNVVALHSSFVIKEYNVFNCYKLLNKV
HHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure
MMELDRYDKQILEILTHEDLNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTK
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LGFSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYS
HHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHH
DILLRRIGKIDNVVALHSSFVIKEYNVFNCYKLLNKV
HHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]