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The map label for this gene is csp [H]

Identifier: 50085086

GI number: 50085086

Start: 1937095

End: 1937304

Strand: Reverse

Name: csp [H]

Synonym: ACIAD1948

Alternate gene names: 50085086

Gene position: 1937304-1937095 (Counterclockwise)

Preceding gene: 50085090

Following gene: 50085085

Centisome position: 53.83

GC content: 35.24

Gene sequence:

>210_bases
ATGTCTAACTCAGTTAATGGTACAGTTAAGTGGTTTAATGAAGTTAAAGGTTTTGGCTTTATTCAACAAGATTCAGGTCC
AGATGTTTTTGCTCATTTTAAAGAAATTGCAAGCTCAGGCTTCAAAACTTTATATGAAGGTCAACGTGTATCATTTGGTA
TCGTAGACGGTCAAAAAGGCCCAAGTGCGGTAAATATCATTGCTCTATAA

Upstream 100 bases:

>100_bases
CCGTTTTTTTAGATTCTTCAGCTCAATTTGTTAAAATTTTCCAAGTTACAATCGTCATTAAAAGATGACTCTAAATTATT
AAAAATCAATAGGATATATT

Downstream 100 bases:

>100_bases
GCAATAGATCTAAAAAAAGAGCACCTTAGGGTGCTTTTTTTTGGCGAATCGAAAAATTTGTTTTAAGGATTCTAATTATT
CACTGGAAGTAATTTCTAAT

Product: cold shock-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSNSVNGTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSAVNIIAL

Sequences:

>Translated_69_residues
MSNSVNGTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSAVNIIAL
>Mature_68_residues
SNSVNGTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSAVNIIAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=63.6363636363636, Blast_Score=86, Evalue=6e-19,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=58.5714285714286, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=62.1212121212121, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=55.7142857142857, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=54.4117647058823, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=55.7142857142857, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=48.4375, Blast_Score=60, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7454; Mature: 7323

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSVNGTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKG
CCCCCCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCC
PSAVNIIAL
CCEEEEEEC
>Mature Secondary Structure 
SNSVNGTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKG
CCCCCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCC
PSAVNIIAL
CCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10483731 [H]