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The map label for this gene is rsfA [H]

Identifier: 49188220

GI number: 49188220

Start: 5121154

End: 5121846

Strand: Direct

Name: rsfA [H]

Synonym: BAS5235

Alternate gene names: 49188220

Gene position: 5121154-5121846 (Clockwise)

Preceding gene: 49188212

Following gene: 49188222

Centisome position: 97.94

GC content: 36.65

Gene sequence:

>693_bases
ATGAAAGTAAGACAAGATGCTTGGACGGATGAGGATGATTTATTACTCGCTGAAACTGTACTTCGTCACGTTCGAGAAGG
AAGTACTCAATTAAATGCATTTGAAGAAGTAGGAGACAAGTTAAATCGTACATCGGCTGCCTGTGGTTTCCGTTGGAATG
CTGTTGTTCGCTATAGCTATGAACAAGCTCTTCAACTAGCAAAAAAACATCGTAAAGATAAAATGCGTGCTGCAAGTGGT
GAACAAGCGAAAAAACGTTTACTTTATACACCACCAGCTTCTGGAGCAATAACGGATTATGATGAATTAGTTCAAGAAGA
AACAACTGTACAATATAAAGAAGCTATTCCATATCAAGAATCTACCGTACCTGCTGCAAAAGGCTCTATGACAATGCAAG
ATGTTATTTATTTCTTACAAACAGTCGGATCTTCAAATATAAAAGTGACAGCTCTTGAAAACGAGAATACGAGATTGAAA
CAAGAAATGAAAGCACAAATCCTTCGAAATGAAGAATTAGAAAAGAAACTAGAAAAGTTAGAAAAGCAATCTCATACTGT
ACAAGAAGATTACGAAACACTTATGAACATTATGAACCGAGCTCGTAAGTTAGCAGTCATGGATGACGAAGAGCGTTCTC
AAACATCTTTCCGAATGGATCGAAACGGTAATTTAGAAAAAATTGCAGAGTAA

Upstream 100 bases:

>100_bases
TCATCGAAATCTACCATATTTTTAAAAGCTTTGTATAAAAGCTCATTTTTTTGCCCATTATAAAAATAGGAAGTTCATAA
AAAGAAAGGGAGTTGAATCT

Downstream 100 bases:

>100_bases
AAAGGATGCATTACATGCATCCTTTTTGTTATTTCACTTCAACCATATGTGCTTCTTCTACTTTAGAACCCCTCTTTATA
TCTGGGAAAATCTTTTCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKVRQDAWTDEDDLLLAETVLRHVREGSTQLNAFEEVGDKLNRTSAACGFRWNAVVRYSYEQALQLAKKHRKDKMRAASG
EQAKKRLLYTPPASGAITDYDELVQEETTVQYKEAIPYQESTVPAAKGSMTMQDVIYFLQTVGSSNIKVTALENENTRLK
QEMKAQILRNEELEKKLEKLEKQSHTVQEDYETLMNIMNRARKLAVMDDEERSQTSFRMDRNGNLEKIAE

Sequences:

>Translated_230_residues
MKVRQDAWTDEDDLLLAETVLRHVREGSTQLNAFEEVGDKLNRTSAACGFRWNAVVRYSYEQALQLAKKHRKDKMRAASG
EQAKKRLLYTPPASGAITDYDELVQEETTVQYKEAIPYQESTVPAAKGSMTMQDVIYFLQTVGSSNIKVTALENENTRLK
QEMKAQILRNEELEKKLEKLEKQSHTVQEDYETLMNIMNRARKLAVMDDEERSQTSFRMDRNGNLEKIAE
>Mature_230_residues
MKVRQDAWTDEDDLLLAETVLRHVREGSTQLNAFEEVGDKLNRTSAACGFRWNAVVRYSYEQALQLAKKHRKDKMRAASG
EQAKKRLLYTPPASGAITDYDELVQEETTVQYKEAIPYQESTVPAAKGSMTMQDVIYFLQTVGSSNIKVTALENENTRLK
QEMKAQILRNEELEKKLEKLEKQSHTVQEDYETLMNIMNRARKLAVMDDEERSQTSFRMDRNGNLEKIAE

Specific function: Seems to improve the efficiency of sporulation by fine- tuning the expression of genes in the sigma F regulon, particularly the timing of their expression. Negatively regulates spoIIR and its own synthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Myb-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014243
- InterPro:   IPR017877 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26501; Mature: 26501

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS50090 MYB_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVRQDAWTDEDDLLLAETVLRHVREGSTQLNAFEEVGDKLNRTSAACGFRWNAVVRYSY
CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
EQALQLAKKHRKDKMRAASGEQAKKRLLYTPPASGAITDYDELVQEETTVQYKEAIPYQE
HHHHHHHHHHHHHHHHHCCCHHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
STVPAAKGSMTMQDVIYFLQTVGSSNIKVTALENENTRLKQEMKAQILRNEELEKKLEKL
CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
EKQSHTVQEDYETLMNIMNRARKLAVMDDEERSQTSFRMDRNGNLEKIAE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCCCCHHHHCC
>Mature Secondary Structure
MKVRQDAWTDEDDLLLAETVLRHVREGSTQLNAFEEVGDKLNRTSAACGFRWNAVVRYSY
CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
EQALQLAKKHRKDKMRAASGEQAKKRLLYTPPASGAITDYDELVQEETTVQYKEAIPYQE
HHHHHHHHHHHHHHHHHCCCHHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
STVPAAKGSMTMQDVIYFLQTVGSSNIKVTALENENTRLKQEMKAQILRNEELEKKLEKL
CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
EKQSHTVQEDYETLMNIMNRARKLAVMDDEERSQTSFRMDRNGNLEKIAE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377; 10629188 [H]