Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
---|---|
Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is sigW [H]
Identifier: 49188198
GI number: 49188198
Start: 5100149
End: 5100676
Strand: Reverse
Name: sigW [H]
Synonym: BAS5212
Alternate gene names: 49188198
Gene position: 5100676-5100149 (Counterclockwise)
Preceding gene: 49188199
Following gene: 49188197
Centisome position: 97.55
GC content: 31.63
Gene sequence:
>528_bases ATGGAAGAAAAGGTAGAAGAATTAATTGATATATATAAGCAGCAAATATATTCCTTATGCTATAAGTTAGCGAAGACGAA AGAAGACGCGGAAGATATTTTTCAAGAGACATGGATAAAAGTTTTTTCATCGCGGCACCAACTTTCTTACGTGGAGAATT ATAAAAAGTGGATTACTACGATTTGTGTTCGTACATTTTATGATTTTTATAGCAAAAAGAAAAGGTGGAAAGATCGTGTA TTGGATTTATTTCATAAAGAAGATGGTGGAGAAATAGAGTTTGCAGATGATGTGAATATATCAGAAGAATTCATTCAAAA AGTCGAAGCAGAAATGATACGAGAAGTTATACAGTTATTAAACGAAAAATATAAAACAGTGCTCGTACTCTACTATTATG AACAATATTCTTACAAAGAAATGAGTGAAATATTAAATATACCAATTGGTACGGTGAAATACCGTCTTAATTATGCCAAG AAGCAAATGCGAGAACATTTGGAGGGGTTTGTTCATGAAGGAAGATAA
Upstream 100 bases:
>100_bases TATTGTGATTGCCTTTTTGTATGGAAATAATAAAAAAATAAAATTTTATCAAACAAAAGGAGAATTTGCGTCGTCTTATA TAAATGACAGGAGGTTTCAG
Downstream 100 bases:
>100_bases GTTTGAACAGAAGATAAAGAGTAGCTTAGCAGAAGAGATAATTCCAAGCGAAGAGCTGATAGATAACACGAAGCAGGGCG TGCGAAAAGCTCAGAAGTTA
Product: RNA polymerase sigma factor
Products: NA
Alternate protein names: Sigma-W factor [H]
Number of amino acids: Translated: 175; Mature: 175
Protein sequence:
>175_residues MEEKVEELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITTICVRTFYDFYSKKKRWKDRV LDLFHKEDGGEIEFADDVNISEEFIQKVEAEMIREVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAK KQMREHLEGFVHEGR
Sequences:
>Translated_175_residues MEEKVEELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITTICVRTFYDFYSKKKRWKDRV LDLFHKEDGGEIEFADDVNISEEFIQKVEAEMIREVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAK KQMREHLEGFVHEGR >Mature_175_residues MEEKVEELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITTICVRTFYDFYSKKKRWKDRV LDLFHKEDGGEIEFADDVNISEEFIQKVEAEMIREVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAK KQMREHLEGFVHEGR
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]
COG id: COG1595
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: <10 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014284 - InterPro: IPR014294 - InterPro: IPR000838 - InterPro: IPR007627 - InterPro: IPR013249 - InterPro: IPR013325 - InterPro: IPR013324 - InterPro: IPR011991 [H]
Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]
EC number: NA
Molecular weight: Translated: 21396; Mature: 21396
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEEKVEELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITT CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ICVRTFYDFYSKKKRWKDRVLDLFHKEDGGEIEFADDVNISEEFIQKVEAEMIREVIQLL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHH NEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAKKQMREHLEGFVHEGR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MEEKVEELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITT CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ICVRTFYDFYSKKKRWKDRVLDLFHKEDGGEIEFADDVNISEEFIQKVEAEMIREVIQLL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHH NEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAKKQMREHLEGFVHEGR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9274029; 9384377; 12207695 [H]