Definition Bacillus anthracis str. Sterne chromosome, complete genome.
Accession NC_005945
Length 5,228,663

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The map label for this gene is sigW [H]

Identifier: 49188198

GI number: 49188198

Start: 5100149

End: 5100676

Strand: Reverse

Name: sigW [H]

Synonym: BAS5212

Alternate gene names: 49188198

Gene position: 5100676-5100149 (Counterclockwise)

Preceding gene: 49188199

Following gene: 49188197

Centisome position: 97.55

GC content: 31.63

Gene sequence:

>528_bases
ATGGAAGAAAAGGTAGAAGAATTAATTGATATATATAAGCAGCAAATATATTCCTTATGCTATAAGTTAGCGAAGACGAA
AGAAGACGCGGAAGATATTTTTCAAGAGACATGGATAAAAGTTTTTTCATCGCGGCACCAACTTTCTTACGTGGAGAATT
ATAAAAAGTGGATTACTACGATTTGTGTTCGTACATTTTATGATTTTTATAGCAAAAAGAAAAGGTGGAAAGATCGTGTA
TTGGATTTATTTCATAAAGAAGATGGTGGAGAAATAGAGTTTGCAGATGATGTGAATATATCAGAAGAATTCATTCAAAA
AGTCGAAGCAGAAATGATACGAGAAGTTATACAGTTATTAAACGAAAAATATAAAACAGTGCTCGTACTCTACTATTATG
AACAATATTCTTACAAAGAAATGAGTGAAATATTAAATATACCAATTGGTACGGTGAAATACCGTCTTAATTATGCCAAG
AAGCAAATGCGAGAACATTTGGAGGGGTTTGTTCATGAAGGAAGATAA

Upstream 100 bases:

>100_bases
TATTGTGATTGCCTTTTTGTATGGAAATAATAAAAAAATAAAATTTTATCAAACAAAAGGAGAATTTGCGTCGTCTTATA
TAAATGACAGGAGGTTTCAG

Downstream 100 bases:

>100_bases
GTTTGAACAGAAGATAAAGAGTAGCTTAGCAGAAGAGATAATTCCAAGCGAAGAGCTGATAGATAACACGAAGCAGGGCG
TGCGAAAAGCTCAGAAGTTA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MEEKVEELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITTICVRTFYDFYSKKKRWKDRV
LDLFHKEDGGEIEFADDVNISEEFIQKVEAEMIREVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAK
KQMREHLEGFVHEGR

Sequences:

>Translated_175_residues
MEEKVEELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITTICVRTFYDFYSKKKRWKDRV
LDLFHKEDGGEIEFADDVNISEEFIQKVEAEMIREVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAK
KQMREHLEGFVHEGR
>Mature_175_residues
MEEKVEELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITTICVRTFYDFYSKKKRWKDRV
LDLFHKEDGGEIEFADDVNISEEFIQKVEAEMIREVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAK
KQMREHLEGFVHEGR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21396; Mature: 21396

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKVEELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ICVRTFYDFYSKKKRWKDRVLDLFHKEDGGEIEFADDVNISEEFIQKVEAEMIREVIQLL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHH
NEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAKKQMREHLEGFVHEGR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEEKVEELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ICVRTFYDFYSKKKRWKDRVLDLFHKEDGGEIEFADDVNISEEFIQKVEAEMIREVIQLL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHH
NEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAKKQMREHLEGFVHEGR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]