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The map label for this gene is lytT [H]

Identifier: 49188120

GI number: 49188120

Start: 5018839

End: 5019252

Strand: Reverse

Name: lytT [H]

Synonym: BAS5134

Alternate gene names: 49188120

Gene position: 5019252-5018839 (Counterclockwise)

Preceding gene: 49188121

Following gene: 49188119

Centisome position: 95.99

GC content: 35.02

Gene sequence:

>414_bases
GTGAAAAAAATAGAAATCGAACAAGAAGAAGCAGAAGAAGTCGATGAAGAAAAAGTCATTCAAATGATTCCGCAAATGAA
GTTAGAAAGAATACCAGCGAAAGTGAACGATAAAATCATTTTATTAGACCCGATGGAAATTCATTTCATTGAAACGCAAA
ACGGAGTAACACATATTCATGTGCGCGAAGGTGATTTCGTATGTGTATTAACATTAAGCGAACTAGAAACGAGATTAACA
GGTTTTGGTTTCTTTAGATGCCACCGCTCTTATCTTGTAAATCTACAAAGAGTACGAGAAGTGATTACGTGGACTCGTAA
TAGTTTTAGTTTAATTTTGGATGACGAAAGAAAAAGTTTAATTCCGCTTTCGAAAGGACGAATGGATGAATTAAAAGGCG
TGATTGGGCTATAA

Upstream 100 bases:

>100_bases
GAAAATGAAAGAGTAAGGAAAGGCAATTTTTATTACGTCATCATTTCTATCGGATGCCCTTTCGTTAACAGAAGATGTAT
ACATATTAAATAATGATGGT

Downstream 100 bases:

>100_bases
AAAGTGCTCCTATAAGCTCAAAATACGATTCATTCACCGGTAAAAATACTCCTTTTACCGGTATTTTACTGCGTAAATCC
TTTGTTTTTCATATGATGGA

Product: ABC transporter ATP-binding protein, C-terminus

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MKKIEIEQEEAEEVDEEKVIQMIPQMKLERIPAKVNDKIILLDPMEIHFIETQNGVTHIHVREGDFVCVLTLSELETRLT
GFGFFRCHRSYLVNLQRVREVITWTRNSFSLILDDERKSLIPLSKGRMDELKGVIGL

Sequences:

>Translated_137_residues
MKKIEIEQEEAEEVDEEKVIQMIPQMKLERIPAKVNDKIILLDPMEIHFIETQNGVTHIHVREGDFVCVLTLSELETRLT
GFGFFRCHRSYLVNLQRVREVITWTRNSFSLILDDERKSLIPLSKGRMDELKGVIGL
>Mature_137_residues
MKKIEIEQEEAEEVDEEKVIQMIPQMKLERIPAKVNDKIILLDPMEIHFIETQNGVTHIHVREGDFVCVLTLSELETRLT
GFGFFRCHRSYLVNLQRVREVITWTRNSFSLILDDERKSLIPLSKGRMDELKGVIGL

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=104, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 16007; Mature: 16007

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIEIEQEEAEEVDEEKVIQMIPQMKLERIPAKVNDKIILLDPMEIHFIETQNGVTHIH
CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCEEEEE
VREGDFVCVLTLSELETRLTGFGFFRCHRSYLVNLQRVREVITWTRNSFSLILDDERKSL
EECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
IPLSKGRMDELKGVIGL
CCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MKKIEIEQEEAEEVDEEKVIQMIPQMKLERIPAKVNDKIILLDPMEIHFIETQNGVTHIH
CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCEEEEE
VREGDFVCVLTLSELETRLTGFGFFRCHRSYLVNLQRVREVITWTRNSFSLILDDERKSL
EECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
IPLSKGRMDELKGVIGL
CCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]