Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is spoIIID [H]
Identifier: 49188115
GI number: 49188115
Start: 5014555
End: 5014953
Strand: Reverse
Name: spoIIID [H]
Synonym: BAS5129
Alternate gene names: 49188115
Gene position: 5014953-5014555 (Counterclockwise)
Preceding gene: 49188116
Following gene: 49188114
Centisome position: 95.91
GC content: 38.35
Gene sequence:
>399_bases GTGAATCATTTCATTATAAACCCAAGAATGTTTAACGCTTACAAACAGCACTCACACTTACTTCTAAGTCGTATGCAGCG AGGCTCATTTCACACTTCTCACATCCAATTTAGGGAGGCGAGTGGTGTGCACGATTACATCAAAGAGAGAACTATCAAGA TTGGTAAGTATATCGTGGAGACAAGAAAGACAGTGCGTGTCATTGCAAAGGAATTTGGGGTATCAAAGAGTACAGTCCAT AAAGATTTAACAGAACGTCTACCAGAAATTAATCCAGAGCTCGCAAATGAAGTGAAAGAAATTCTTGATTATCATAAGTC TATTCGTCATTTAAGAGGCGGAGAAGCAACAAAGCAAAAGTATAGAAAAGAAGATGTAGAAAAGCCGGTACGTCAATAA
Upstream 100 bases:
>100_bases TATTTAGTCCGCAAAAAAAGTGAACATGTAGCATATATCAGTAGTGCGGGCAATACAATGGTATAAACCAAAGCAAAGAG AGTGTTTGAGGTGAGAAATC
Downstream 100 bases:
>100_bases AGGTACAATCGTGAACATTCCGTTTCAATTCGGTAATATTTTTCAGAAGAATTCTTTTTGCGAATATTACGTTTCTGTTA AATTTATGATAAAATCAGAA
Product: stage III sporulation protein D
Products: NA
Alternate protein names: 14 kDa transcription factor [H]
Number of amino acids: Translated: 132; Mature: 132
Protein sequence:
>132_residues MNHFIINPRMFNAYKQHSHLLLSRMQRGSFHTSHIQFREASGVHDYIKERTIKIGKYIVETRKTVRVIAKEFGVSKSTVH KDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKEDVEKPVRQ
Sequences:
>Translated_132_residues MNHFIINPRMFNAYKQHSHLLLSRMQRGSFHTSHIQFREASGVHDYIKERTIKIGKYIVETRKTVRVIAKEFGVSKSTVH KDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKEDVEKPVRQ >Mature_132_residues MNHFIINPRMFNAYKQHSHLLLSRMQRGSFHTSHIQFREASGVHDYIKERTIKIGKYIVETRKTVRVIAKEFGVSKSTVH KDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKEDVEKPVRQ
Specific function: This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012287 - InterPro: IPR014208 - InterPro: IPR018356 [H]
Pfam domain/function: PF12116 SpoIIID [H]
EC number: NA
Molecular weight: Translated: 15620; Mature: 15620
Theoretical pI: Translated: 10.56; Mature: 10.56
Prosite motif: PS00894 HTH_DEOR_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHFIINPRMFNAYKQHSHLLLSRMQRGSFHTSHIQFREASGVHDYIKERTIKIGKYIVE CCCEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH TRKTVRVIAKEFGVSKSTVHKDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQK HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH YRKEDVEKPVRQ HHHHHHHHHCCC >Mature Secondary Structure MNHFIINPRMFNAYKQHSHLLLSRMQRGSFHTSHIQFREASGVHDYIKERTIKIGKYIVE CCCEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH TRKTVRVIAKEFGVSKSTVHKDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQK HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH YRKEDVEKPVRQ HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2514119; 2112673; 9353933; 9384377; 2492118 [H]