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The map label for this gene is yocH [H]

Identifier: 49188076

GI number: 49188076

Start: 4970446

End: 4971318

Strand: Direct

Name: yocH [H]

Synonym: BAS5090

Alternate gene names: 49188076

Gene position: 4970446-4971318 (Clockwise)

Preceding gene: 49188074

Following gene: 49188077

Centisome position: 95.06

GC content: 41.12

Gene sequence:

>873_bases
ATGAAAAAATTAATTGGAATAGCAACAGCAGCAGTTTTTGGTCTTGGGATTTTCACATCATCTGCTAATGCAGAAACTGT
TGTAACAACAGACGTACTAAATGTACGCGAAAACCCTACTACTGAATCAAAAGTTGTCGGTAAATTACTAAACGGTAATA
AAATAGATGTTCAAAATACAGAGAACGGATGGTCAAAAATCACTTTAGATGGTAAAGACGCATTCGTAAGTGCAGAGTTC
ACAAAAAGCATCTACTACGTAACAGCTAACGTATTAAACGTACGTGCTGAAGCGAACACAGACTCAGAAATCCTTGGAAC
GTTGAAGAAAGATGATATGATCGAAACAACGAACCAAGTACAAAATGAGTGGTTACAATTTGAATATAACGGGAAAACAG
CTTACGTTCACGTTCCTTTCTTAACAGGTACAGCACCTGTTATTGAGAAACAAGAACAACCTGCTCCTGCTAAAGCTGTA
GCGCCAGCTAAAGCACCTGCAGCACAAGCAAAACAAGCTGCTAAGCCTGCTGTAAAAGCTGCTAACACTAGCGCACCTGC
TGGTGGTCGTGAGTTAACAGTTGTAGCTACAGCATATACAGCTCATCCGAGCGAAAACGGTGGCACATACGGCGGCCGTG
TATTAACTGCAATGGGTCATGACTTAACAGCGAACCCAAACATGAAAATGATTGCTGTTGATCCGAAAGTAATCCCATTA
GGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCGATCGCTGGAGATACTGGCGGTGCAATTAAAGGTAACCGTATCGA
CATCCTACTTGGATCAGATAGCGCTGCTCAAAAATGGGGACGCAAAACTGTTAAAGTGAAAATTTTAAAATAA

Upstream 100 bases:

>100_bases
ACGACTTATTACGAATGGTTTGTAATTGTGTGTTTTCCCGAAATCCGAAAAAATCTGTTGCTATAATGAGGACACGAAAA
CAAACGCAATGGAGGCTATC

Downstream 100 bases:

>100_bases
CCAATGACTGCTGAAGCCAGTTCTCTTTGTTGAGAGCTGGCTTTTATTTTTTTATAATAGCTATAAGGGGGCTATACTCA
TGAATGTACAAGCAAAAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MKKLIGIATAAVFGLGIFTSSANAETVVTTDVLNVRENPTTESKVVGKLLNGNKIDVQNTENGWSKITLDGKDAFVSAEF
TKSIYYVTANVLNVRAEANTDSEILGTLKKDDMIETTNQVQNEWLQFEYNGKTAYVHVPFLTGTAPVIEKQEQPAPAKAV
APAKAPAAQAKQAAKPAVKAANTSAPAGGRELTVVATAYTAHPSENGGTYGGRVLTAMGHDLTANPNMKMIAVDPKVIPL
GSKVWVEGYGEAIAGDTGGAIKGNRIDILLGSDSAAQKWGRKTVKVKILK

Sequences:

>Translated_290_residues
MKKLIGIATAAVFGLGIFTSSANAETVVTTDVLNVRENPTTESKVVGKLLNGNKIDVQNTENGWSKITLDGKDAFVSAEF
TKSIYYVTANVLNVRAEANTDSEILGTLKKDDMIETTNQVQNEWLQFEYNGKTAYVHVPFLTGTAPVIEKQEQPAPAKAV
APAKAPAAQAKQAAKPAVKAANTSAPAGGRELTVVATAYTAHPSENGGTYGGRVLTAMGHDLTANPNMKMIAVDPKVIPL
GSKVWVEGYGEAIAGDTGGAIKGNRIDILLGSDSAAQKWGRKTVKVKILK
>Mature_290_residues
MKKLIGIATAAVFGLGIFTSSANAETVVTTDVLNVRENPTTESKVVGKLLNGNKIDVQNTENGWSKITLDGKDAFVSAEF
TKSIYYVTANVLNVRAEANTDSEILGTLKKDDMIETTNQVQNEWLQFEYNGKTAYVHVPFLTGTAPVIEKQEQPAPAKAV
APAKAPAAQAKQAAKPAVKAANTSAPAGGRELTVVATAYTAHPSENGGTYGGRVLTAMGHDLTANPNMKMIAVDPKVIPL
GSKVWVEGYGEAIAGDTGGAIKGNRIDILLGSDSAAQKWGRKTVKVKILK

Specific function: Unknown

COG id: COG3584

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 30596; Mature: 30596

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLIGIATAAVFGLGIFTSSANAETVVTTDVLNVRENPTTESKVVGKLLNGNKIDVQNT
CCHHHHHHHHHHHHHHEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEC
ENGWSKITLDGKDAFVSAEFTKSIYYVTANVLNVRAEANTDSEILGTLKKDDMIETTNQV
CCCCEEEEECCCCEEEEHHHHCEEEEEEEEEEEEEECCCCCHHHHHCCCCCCHHHHHHHH
QNEWLQFEYNGKTAYVHVPFLTGTAPVIEKQEQPAPAKAVAPAKAPAAQAKQAAKPAVKA
CCCEEEEEECCCEEEEEEEEECCCCCHHCCCCCCCCCHHCCCCCCCHHHHHHHHCCHHHC
ANTSAPAGGRELTVVATAYTAHPSENGGTYGGRVLTAMGHDLTANPNMKMIAVDPKVIPL
CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCEECCCCEEEEEECCEEEEC
GSKVWVEGYGEAIAGDTGGAIKGNRIDILLGSDSAAQKWGRKTVKVKILK
CCEEEEEECCCEECCCCCCCEECCEEEEEECCCHHHHHCCCEEEEEEEEC
>Mature Secondary Structure
MKKLIGIATAAVFGLGIFTSSANAETVVTTDVLNVRENPTTESKVVGKLLNGNKIDVQNT
CCHHHHHHHHHHHHHHEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEC
ENGWSKITLDGKDAFVSAEFTKSIYYVTANVLNVRAEANTDSEILGTLKKDDMIETTNQV
CCCCEEEEECCCCEEEEHHHHCEEEEEEEEEEEEEECCCCCHHHHHCCCCCCHHHHHHHH
QNEWLQFEYNGKTAYVHVPFLTGTAPVIEKQEQPAPAKAVAPAKAPAAQAKQAAKPAVKA
CCCEEEEEECCCEEEEEEEEECCCCCHHCCCCCCCCCHHCCCCCCCHHHHHHHHCCHHHC
ANTSAPAGGRELTVVATAYTAHPSENGGTYGGRVLTAMGHDLTANPNMKMIAVDPKVIPL
CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCEECCCCEEEEEECCEEEEC
GSKVWVEGYGEAIAGDTGGAIKGNRIDILLGSDSAAQKWGRKTVKVKILK
CCEEEEEECCCEECCCCCCCEECCEEEEEECCCHHHHHCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]