Click here to switch to the map view.

The map label for this gene is ymfN [C]

Identifier: 49187963

GI number: 49187963

Start: 4851132

End: 4852709

Strand: Direct

Name: ymfN [C]

Synonym: BAS4976

Alternate gene names: 49187963

Gene position: 4851132-4852709 (Clockwise)

Preceding gene: 49187962

Following gene: 49187964

Centisome position: 92.78

GC content: 37.64

Gene sequence:

>1578_bases
ATGACGATGAATAAGTCGGTAGCTTATGCAAAAGCTGTGGTTTTCGGTGACATCGTTGCACCTTCACAAGTGAGACAAGC
ATGTATTAATTTCCTACATGAATACTACGTCCTCCAAGACCAAGCTGATTACATATACAAATGGAACACCAAAATAGAAA
AGAAAATTGATAAAATCATTAAGAATCTTAACTTCGCCCGTGGAGCAAAATCCGCTCAACCTATGTTCCCCAACCTTGCT
TTGTTCCAATGGTTTATCATTCAGAATACATTTTGCTGGGTCTACAAGGAGTTCCCAACCAAACGTAAAATTCGTGAAGT
TATTTTCACTGTAGCTCGTAAAAATGCTAAGTCAGTATTAAGCTGTATCATTCATATCCTAGCATTCTTCCTTGATGAAG
CTAACCAAACGCATTATATCGGTTCAAATACTAAACAACAGGCGACAATCATCTTTGATGAACTTGTAGCGATTATCAAA
GCTTCTCCTAATATGTTGCCATTCTTCAATATCAAGAAGACATATGTAGAATTTACACCAAAGAACTGTAAGATTGTAGC
TCTTTCAGGTGATGCGTCAAAAGCCGATGGAACAATGGTCTACTGCGCTAGCGTCGATGAACTTGGAGCTTCCAATGAAA
TTTTCAAAATGGTAAGTTCCTTGGAAACGGGACAATTTGGCCCACGTAATCCTCTCATTATTAAAATTTCTACGTCTTAT
CCTATCGAGAATGGGTTCAACTATTGGAATGAAACGGTAGATGCTTTACGTAAAAACACGTTTGCTGACGAGCCTAACCC
ACGACAATTCGGTTTGATATTTACTATTGATAATCCCAAAAAACGCATTCAGTTGAACGGTAGGGACGCTGAACGATGGG
AAAACCCTGAAGTTTGGGCAGAAGCTAATCCGTTGGTTGCTGAAGTTCAAGACCTTGCAGATAAATTGCTCGAAGACTAC
AAAACTAAGAAGGATATTCCAAAGGACTTTTTCCTATTTAAAGTTAAAAACTTGAATATGTGGTTAGGAGCCAATGAAGG
TGATGGTAACTTCTTTGTAGATAAACATACTTTACAAAAAAGCTTGTACAAGCCAGCTTCTGATTGGGAATGGTGGAGAG
GAAAACGTCAGGTGATTATTGGACTCGATTTGTCGTTATCTACAGATAATACAGCTGTTACATTTATGTGGTACGACCAA
CAAAATGAACATCATTATGCTAAAAACCTTGTCTTTTATCCGAAGAATAAGGAAACTGACAAAACCCAGAAAGAACGTAT
TCCTTACGACAAATGGGCACGTGCTGGATACTGTCAACCAATTGGTGAAGATACAGTTGATTATGATGAAATGGCGGATA
TAATTGTTGATATTTGCGAGCAATACGATATTCAAATAGGCTCCATTGCATACGACACAAAATACAGTTATACGTTACTA
AAACGGTTAGTTAACGAACTATCAATGGAAGTTGATCCAGTCAAAATCGAACAAGATGCTCGACATTTGGGCAATGCTAT
TTCATACCTTCAAAGAATCATTTATGAAGGTACTTTTTTTATGCCCCAAATCCATTAA

Upstream 100 bases:

>100_bases
AACGATATAGCTAAATTGATGATTGAAGAGAAAAAACTGGAACAGATGAATCAACAAAATAATCAAGCTATCAATCCACT
GATGGCATTACTGGAGGAGG

Downstream 100 bases:

>100_bases
TGGAATCAGCTTTTATTAATGGATTAATCGAGTTCAGACAAGGGAAACCATACATTGCAAAATCTGATAAACACCGCAAT
AAGATTGATAACTTGTTTAG

Product: prophage LambdaBa03, terminase, large subunit

Products: NA

Alternate protein names: Terminase; Terminase Large Subunit; Phage Terminase; Prophage; Phage Terminase-Like Protein Large Subunit; Prophage Lp3 Terminase Large Subunit; Phage-Related Terminase Large Subunit; Phage-Terminase Large Subunit; Bacteriophage Terminase-Like Protein Large Subunit; Bacteriophage Terminase Large Subunit; Prophage LambdaSa; Phage Terminase-Like Protein; Phage Large Terminase Subunit; Terminase-Large Subunit; Phage Related Terminase Large Sub-Unit; Phage-Related Terminase

Number of amino acids: Translated: 525; Mature: 524

Protein sequence:

>525_residues
MTMNKSVAYAKAVVFGDIVAPSQVRQACINFLHEYYVLQDQADYIYKWNTKIEKKIDKIIKNLNFARGAKSAQPMFPNLA
LFQWFIIQNTFCWVYKEFPTKRKIREVIFTVARKNAKSVLSCIIHILAFFLDEANQTHYIGSNTKQQATIIFDELVAIIK
ASPNMLPFFNIKKTYVEFTPKNCKIVALSGDASKADGTMVYCASVDELGASNEIFKMVSSLETGQFGPRNPLIIKISTSY
PIENGFNYWNETVDALRKNTFADEPNPRQFGLIFTIDNPKKRIQLNGRDAERWENPEVWAEANPLVAEVQDLADKLLEDY
KTKKDIPKDFFLFKVKNLNMWLGANEGDGNFFVDKHTLQKSLYKPASDWEWWRGKRQVIIGLDLSLSTDNTAVTFMWYDQ
QNEHHYAKNLVFYPKNKETDKTQKERIPYDKWARAGYCQPIGEDTVDYDEMADIIVDICEQYDIQIGSIAYDTKYSYTLL
KRLVNELSMEVDPVKIEQDARHLGNAISYLQRIIYEGTFFMPQIH

Sequences:

>Translated_525_residues
MTMNKSVAYAKAVVFGDIVAPSQVRQACINFLHEYYVLQDQADYIYKWNTKIEKKIDKIIKNLNFARGAKSAQPMFPNLA
LFQWFIIQNTFCWVYKEFPTKRKIREVIFTVARKNAKSVLSCIIHILAFFLDEANQTHYIGSNTKQQATIIFDELVAIIK
ASPNMLPFFNIKKTYVEFTPKNCKIVALSGDASKADGTMVYCASVDELGASNEIFKMVSSLETGQFGPRNPLIIKISTSY
PIENGFNYWNETVDALRKNTFADEPNPRQFGLIFTIDNPKKRIQLNGRDAERWENPEVWAEANPLVAEVQDLADKLLEDY
KTKKDIPKDFFLFKVKNLNMWLGANEGDGNFFVDKHTLQKSLYKPASDWEWWRGKRQVIIGLDLSLSTDNTAVTFMWYDQ
QNEHHYAKNLVFYPKNKETDKTQKERIPYDKWARAGYCQPIGEDTVDYDEMADIIVDICEQYDIQIGSIAYDTKYSYTLL
KRLVNELSMEVDPVKIEQDARHLGNAISYLQRIIYEGTFFMPQIH
>Mature_524_residues
TMNKSVAYAKAVVFGDIVAPSQVRQACINFLHEYYVLQDQADYIYKWNTKIEKKIDKIIKNLNFARGAKSAQPMFPNLAL
FQWFIIQNTFCWVYKEFPTKRKIREVIFTVARKNAKSVLSCIIHILAFFLDEANQTHYIGSNTKQQATIIFDELVAIIKA
SPNMLPFFNIKKTYVEFTPKNCKIVALSGDASKADGTMVYCASVDELGASNEIFKMVSSLETGQFGPRNPLIIKISTSYP
IENGFNYWNETVDALRKNTFADEPNPRQFGLIFTIDNPKKRIQLNGRDAERWENPEVWAEANPLVAEVQDLADKLLEDYK
TKKDIPKDFFLFKVKNLNMWLGANEGDGNFFVDKHTLQKSLYKPASDWEWWRGKRQVIIGLDLSLSTDNTAVTFMWYDQQ
NEHHYAKNLVFYPKNKETDKTQKERIPYDKWARAGYCQPIGEDTVDYDEMADIIVDICEQYDIQIGSIAYDTKYSYTLLK
RLVNELSMEVDPVKIEQDARHLGNAISYLQRIIYEGTFFMPQIH

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60810; Mature: 60679

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMNKSVAYAKAVVFGDIVAPSQVRQACINFLHEYYVLQDQADYIYKWNTKIEKKIDKII
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHHH
KNLNFARGAKSAQPMFPNLALFQWFIIQNTFCWVYKEFPTKRKIREVIFTVARKNAKSVL
HHCCHHCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCHHHHH
SCIIHILAFFLDEANQTHYIGSNTKQQATIIFDELVAIIKASPNMLPFFNIKKTYVEFTP
HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEECCEEEEEEECC
KNCKIVALSGDASKADGTMVYCASVDELGASNEIFKMVSSLETGQFGPRNPLIIKISTSY
CCCEEEEEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCC
PIENGFNYWNETVDALRKNTFADEPNPRQFGLIFTIDNPKKRIQLNGRDAERWENPEVWA
CCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEEEECCCCHHHCCCCCCEE
EANPLVAEVQDLADKLLEDYKTKKDIPKDFFLFKVKNLNMWLGANEGDGNFFVDKHTLQK
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCCCCEEEEHHHHHH
SLYKPASDWEWWRGKRQVIIGLDLSLSTDNTAVTFMWYDQQNEHHYAKNLVFYPKNKETD
HHCCCCCCCHHHCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCHHHCCEEECCCCCCCC
KTQKERIPYDKWARAGYCQPIGEDTVDYDEMADIIVDICEQYDIQIGSIAYDTKYSYTLL
CHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECEEEECCCHHHHHH
KRLVNELSMEVDPVKIEQDARHLGNAISYLQRIIYEGTFFMPQIH
HHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCC
>Mature Secondary Structure 
TMNKSVAYAKAVVFGDIVAPSQVRQACINFLHEYYVLQDQADYIYKWNTKIEKKIDKII
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHHH
KNLNFARGAKSAQPMFPNLALFQWFIIQNTFCWVYKEFPTKRKIREVIFTVARKNAKSVL
HHCCHHCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCHHHHH
SCIIHILAFFLDEANQTHYIGSNTKQQATIIFDELVAIIKASPNMLPFFNIKKTYVEFTP
HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEECCEEEEEEECC
KNCKIVALSGDASKADGTMVYCASVDELGASNEIFKMVSSLETGQFGPRNPLIIKISTSY
CCCEEEEEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCC
PIENGFNYWNETVDALRKNTFADEPNPRQFGLIFTIDNPKKRIQLNGRDAERWENPEVWA
CCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEEEECCCCHHHCCCCCCEE
EANPLVAEVQDLADKLLEDYKTKKDIPKDFFLFKVKNLNMWLGANEGDGNFFVDKHTLQK
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCCCCEEEEHHHHHH
SLYKPASDWEWWRGKRQVIIGLDLSLSTDNTAVTFMWYDQQNEHHYAKNLVFYPKNKETD
HHCCCCCCCHHHCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCHHHCCEEECCCCCCCC
KTQKERIPYDKWARAGYCQPIGEDTVDYDEMADIIVDICEQYDIQIGSIAYDTKYSYTLL
CHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECEEEECCCHHHHHH
KRLVNELSMEVDPVKIEQDARHLGNAISYLQRIIYEGTFFMPQIH
HHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA