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The map label for this gene is ytcD [H]

Identifier: 49187921

GI number: 49187921

Start: 4816030

End: 4816374

Strand: Direct

Name: ytcD [H]

Synonym: BAS4933

Alternate gene names: 49187921

Gene position: 4816030-4816374 (Clockwise)

Preceding gene: 49187914

Following gene: 49187922

Centisome position: 92.11

GC content: 37.68

Gene sequence:

>345_bases
ATGAAGCAATACAATATTCCTGTAGAGGCAACTTTAGAAGTTATCGGCGGCAAATGGAAAGTTGTTATCCTTTGTCACTT
AACGAAAGGTACAAAGAGAACGAGTGAATTAAAACGCTCAATGCCTGGTATTACACAAAAAATGTTAACACAGCAATTAC
GTGAATTAGAAGACGACGGCGTTATTCAAAGAAAAGTATACAACCAAGTCCCGCCAAAAGTAGAATATTCTCTTACTGAT
TACGGTTGGTCTTTAGAATCCATTCTTGATTCTCTTTGTTCTTGGGGCGAATGCCATCTTGAAAAAGAAGGTAAGACATC
GATGCTAATTGCGGAAGGTGAATAA

Upstream 100 bases:

>100_bases
ATTTAACATGATAAAAAGTACGTACTTTAAAGTGCTATAGGTACTAAAAAGTAACATTTGTATGATTTAACTTATTTTAC
TCACAATGGGAGGGTTTCAT

Downstream 100 bases:

>100_bases
TAGGAAAAAGGAAAAAACGAACATGAATTTGTTCATTTTTTCCTTTTTTTCTTATTATATATGTACATTTCTAACTGAAA
CAAAATATTTTATACGCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MKQYNIPVEATLEVIGGKWKVVILCHLTKGTKRTSELKRSMPGITQKMLTQQLRELEDDGVIQRKVYNQVPPKVEYSLTD
YGWSLESILDSLCSWGECHLEKEGKTSMLIAEGE

Sequences:

>Translated_114_residues
MKQYNIPVEATLEVIGGKWKVVILCHLTKGTKRTSELKRSMPGITQKMLTQQLRELEDDGVIQRKVYNQVPPKVEYSLTD
YGWSLESILDSLCSWGECHLEKEGKTSMLIAEGE
>Mature_114_residues
MKQYNIPVEATLEVIGGKWKVVILCHLTKGTKRTSELKRSMPGITQKMLTQQLRELEDDGVIQRKVYNQVPPKVEYSLTD
YGWSLESILDSLCSWGECHLEKEGKTSMLIAEGE

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=94, Percent_Identity=41.4893617021277, Blast_Score=80, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12985; Mature: 12985

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQYNIPVEATLEVIGGKWKVVILCHLTKGTKRTSELKRSMPGITQKMLTQQLRELEDDG
CCCCCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC
VIQRKVYNQVPPKVEYSLTDYGWSLESILDSLCSWGECHLEKEGKTSMLIAEGE
HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEEECC
>Mature Secondary Structure
MKQYNIPVEATLEVIGGKWKVVILCHLTKGTKRTSELKRSMPGITQKMLTQQLRELEDDG
CCCCCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC
VIQRKVYNQVPPKVEYSLTDYGWSLESILDSLCSWGECHLEKEGKTSMLIAEGE
HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]