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The map label for this gene is fadM [H]

Identifier: 49187868

GI number: 49187868

Start: 4760246

End: 4761163

Strand: Reverse

Name: fadM [H]

Synonym: BAS4879

Alternate gene names: 49187868

Gene position: 4761163-4760246 (Counterclockwise)

Preceding gene: 49187869

Following gene: 49187866

Centisome position: 91.06

GC content: 36.17

Gene sequence:

>918_bases
ATGGAACAATTAATGCGAAATTCGTTTCTTTTCTTATCTAAAAATAAAGCGCTAACAAAACTGGCTAAAAAGTACGGTTT
ACGCTTTGGTGCAGGTCGCTTTGTCGCAGGGGAGACAATTGAATTAGCGACAGCAGCTATTCAGGCATTGAACAAGCAAG
GACTTTGTGTAACAATCGATTATTTAGGGGAATTCGTTGATAATGAAGCGGAAGCAAATGAAATGGCTAACCAATCGATT
GAAGCAATCCGTGCAATTGGAAGAGAAGGTCTTGATTCGCAACTTTCTTTAAAGATGACTTCTATGGGATTAGATATCTC
TGATGAAATCGTAATGAACAATATGCGCCGTATTTTAGAAGCTGCAAAAGAAAATGGTGTGTTCGTTACAATTGATATGG
AAGATTATACACGCTGCGGAAAGACAATTGATATCTTTAAACAGTTAAAATCTGAGTACGATAATATTGGTACTGTTATT
CAAGCTTACCTATATCGTACAGAAAAAGATATTGAAGACTTAAATGCGTATAATCCTAATTTACGTCTTGTAAAAGGGGC
TTATAAAGAACCTGAAGAAGTGGCGTTCCCGGACAAGAAAGATGTAGATGACAATTATAAAAAAATTATTAAAATGCACT
TATTAAATGGAAATTATACTGCAATTGCTTCACATGACGAAGCGATTATTGAATATACGAAAAAACTTGCCGAAGAACAC
AACATTCCAAGGGATCAATTTGAATTCCAGATGCTATATGGTATTCGTAATGAGCGTCAACTTGAGCTAGTAAAAGAAGG
TTACAAAATGCGTGTTTACGTACCTTATGGAAACGACTGGTATGGCTACTTCATGCGTCGTCTAGCAGAGCGTCCAGCAA
ACGTTGCGTTCGTATTAAAAGGTATGGTTAAAAAATAA

Upstream 100 bases:

>100_bases
AAATTATCTAAATAATTATTTGTATCCAATAATTTTAAACAATGATATAATTTTGAAGAGGGGTAAAAAACAGATAAATC
AAGTCATAGGGGTGAATTAC

Downstream 100 bases:

>100_bases
CCAAGGAGTAAATACTCCTTGGTTATTTTAATTGCTGAAATGCGTAATGTGCCATTTTCTTCGTATCAGGATACAGTTGC
TTGCGAGTAGAAGATAATAC

Product: proline dehydrogenase family protein

Products: NA

Alternate protein names: PRODH 1; Proline oxidase 1 [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MEQLMRNSFLFLSKNKALTKLAKKYGLRFGAGRFVAGETIELATAAIQALNKQGLCVTIDYLGEFVDNEAEANEMANQSI
EAIRAIGREGLDSQLSLKMTSMGLDISDEIVMNNMRRILEAAKENGVFVTIDMEDYTRCGKTIDIFKQLKSEYDNIGTVI
QAYLYRTEKDIEDLNAYNPNLRLVKGAYKEPEEVAFPDKKDVDDNYKKIIKMHLLNGNYTAIASHDEAIIEYTKKLAEEH
NIPRDQFEFQMLYGIRNERQLELVKEGYKMRVYVPYGNDWYGYFMRRLAERPANVAFVLKGMVKK

Sequences:

>Translated_305_residues
MEQLMRNSFLFLSKNKALTKLAKKYGLRFGAGRFVAGETIELATAAIQALNKQGLCVTIDYLGEFVDNEAEANEMANQSI
EAIRAIGREGLDSQLSLKMTSMGLDISDEIVMNNMRRILEAAKENGVFVTIDMEDYTRCGKTIDIFKQLKSEYDNIGTVI
QAYLYRTEKDIEDLNAYNPNLRLVKGAYKEPEEVAFPDKKDVDDNYKKIIKMHLLNGNYTAIASHDEAIIEYTKKLAEEH
NIPRDQFEFQMLYGIRNERQLELVKEGYKMRVYVPYGNDWYGYFMRRLAERPANVAFVLKGMVKK
>Mature_305_residues
MEQLMRNSFLFLSKNKALTKLAKKYGLRFGAGRFVAGETIELATAAIQALNKQGLCVTIDYLGEFVDNEAEANEMANQSI
EAIRAIGREGLDSQLSLKMTSMGLDISDEIVMNNMRRILEAAKENGVFVTIDMEDYTRCGKTIDIFKQLKSEYDNIGTVI
QAYLYRTEKDIEDLNAYNPNLRLVKGAYKEPEEVAFPDKKDVDDNYKKIIKMHLLNGNYTAIASHDEAIIEYTKKLAEEH
NIPRDQFEFQMLYGIRNERQLELVKEGYKMRVYVPYGNDWYGYFMRRLAERPANVAFVLKGMVKK

Specific function: Catalyzes the oxidation of L-proline to delta-1- pyrroline-5-carboxylate (P5C) [H]

COG id: COG0506

COG function: function code E; Proline dehydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the proline oxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787250, Length=318, Percent_Identity=27.6729559748428, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015590
- InterPro:   IPR002872
- InterPro:   IPR008219 [H]

Pfam domain/function: PF01619 Pro_dh [H]

EC number: =1.5.99.8 [H]

Molecular weight: Translated: 35062; Mature: 35062

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQLMRNSFLFLSKNKALTKLAKKYGLRFGAGRFVAGETIELATAAIQALNKQGLCVTID
CCHHHHCCEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHCCCCCEEEHH
YLGEFVDNEAEANEMANQSIEAIRAIGREGLDSQLSLKMTSMGLDISDEIVMNNMRRILE
HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEHHHCCCCCHHHHHHHHHHHHHH
AAKENGVFVTIDMEDYTRCGKTIDIFKQLKSEYDNIGTVIQAYLYRTEKDIEDLNAYNPN
HHHHCCEEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LRLVKGAYKEPEEVAFPDKKDVDDNYKKIIKMHLLNGNYTAIASHDEAIIEYTKKLAEEH
EEEEECCCCCCHHCCCCCCCCCCHHHHHHHHHHEECCCEEEEECCHHHHHHHHHHHHHHC
NIPRDQFEFQMLYGIRNERQLELVKEGYKMRVYVPYGNDWYGYFMRRLAERPANVAFVLK
CCCHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHH
GMVKK
HHHCC
>Mature Secondary Structure
MEQLMRNSFLFLSKNKALTKLAKKYGLRFGAGRFVAGETIELATAAIQALNKQGLCVTID
CCHHHHCCEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHCCCCCEEEHH
YLGEFVDNEAEANEMANQSIEAIRAIGREGLDSQLSLKMTSMGLDISDEIVMNNMRRILE
HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEHHHCCCCCHHHHHHHHHHHHHH
AAKENGVFVTIDMEDYTRCGKTIDIFKQLKSEYDNIGTVIQAYLYRTEKDIEDLNAYNPN
HHHHCCEEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LRLVKGAYKEPEEVAFPDKKDVDDNYKKIIKMHLLNGNYTAIASHDEAIIEYTKKLAEEH
EEEEECCCCCCHHCCCCCCCCCCHHHHHHHHHHEECCCEEEEECCHHHHHHHHHHHHHHC
NIPRDQFEFQMLYGIRNERQLELVKEGYKMRVYVPYGNDWYGYFMRRLAERPANVAFVLK
CCCHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHH
GMVKK
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA