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The map label for this gene is dapF

Identifier: 49187796

GI number: 49187796

Start: 4699728

End: 4700594

Strand: Reverse

Name: dapF

Synonym: BAS4806

Alternate gene names: 49187796

Gene position: 4700594-4699728 (Counterclockwise)

Preceding gene: 49187797

Following gene: 49187795

Centisome position: 89.9

GC content: 40.02

Gene sequence:

>867_bases
ATGAGCCAATTTTCTTTTACAAAAATGCATGGTCTTGGCAATAGTTATATATATGTAAATATGTTTGAAGAACAAATTCC
TGAAGAAGATTTAGCTCTTGTGGCGGAAAAGGTTTCAAATATTAATACTGGTATTGGAGCCGATGGAATGATTTTAATTT
GTCCATCTGACGTAGCACCTGTGAAAATGCGCATGTTTAATAATGATGGATCAGAAGGAAAGAGCTGTGGTAACGGTCTA
CGCTGCGTAGCGAAATATGCGTATGAGCATAAACTAGTAGAAGATACAGTTTTCACAATTGAAACGTTAGCTGGCATTGT
AACGGCGGAAGTAACGGTAGAAGAAGGGAAAGTTACGTTAGCGAAAATCGATATGGGAGCACCTCGTTTAACACGTGCAG
AAATACCGATGCTTGGTGAAGGTGAAACACCATTTATTCGTGAAAACTTCTTATACAATAATCATCGTTATGCATTTACA
GCTGTTTCAATGGGAAATCCGCATGCGGTTATTTTTGTGGATGATGTAGAACAAGCACCTCTTACAACACTTGGACCAGT
TCTTGAGACACATGAAATGTTCCCAGAACGAGTAAATGTTGAATTCATTGAGATTTTGAATGAGGAAGAGATGAACTTCC
GCGTTTGGGAACGTGGATCTGGCGTAACACAAGCTTGCGGAACAGGGGCGTGTGCTGCAGTTGTAGCCTCTATTTTAAAT
GGAAAGATGGAACGTGGTAAGGAAATTACAGTTCATTTAGCTGGTGGCGATTTAATGATTGCATGGACAGAAGAAGGCAA
CGTGTTAATGAAAGGACCAGCAGAAGTAATTTGCCGCGGAGTGTATGAGTACAAGATAGAAGCGTAA

Upstream 100 bases:

>100_bases
CAAATGTTGTCAAATATGAGAAACGGGGGACATTCATATTGTGTTCTAAAAGCGTGCATTTTATACTTAACATAACAAAT
TATTTTTGGAGTGAATACAA

Downstream 100 bases:

>100_bases
AGATGTATAATAGAACGAGAACAGAAAGGATGGTGTATTTCATGATTGAAGTAACAGAACAAGCAGCTTTTCAAATTAAA
GATATGTTAAAAGATGCTGA

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MSQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVKMRMFNNDGSEGKSCGNGL
RCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT
AVSMGNPHAVIFVDDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILN
GKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYKIEA

Sequences:

>Translated_288_residues
MSQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVKMRMFNNDGSEGKSCGNGL
RCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT
AVSMGNPHAVIFVDDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILN
GKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYKIEA
>Mature_287_residues
SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVKMRMFNNDGSEGKSCGNGLR
CVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFTA
VSMGNPHAVIFVDDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNG
KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYKIEA

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family

Homologues:

Organism=Escherichia coli, GI87082334, Length=277, Percent_Identity=37.9061371841155, Blast_Score=177, Evalue=5e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DAPF_BACAA (C3PDH0)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002869180.1
- ProteinModelPortal:   C3PDH0
- SMR:   C3PDH0
- EnsemblBacteria:   EBBACT00000127028
- GeneID:   7850282
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_5207
- GeneTree:   EBGT00050000002647
- ProtClustDB:   PRK00450
- GO:   GO:0005737
- HAMAP:   MF_00197
- InterPro:   IPR001653
- InterPro:   IPR018510
- TIGRFAMs:   TIGR00652

Pfam domain/function: PF01678 DAP_epimerase

EC number: =5.1.1.7

Molecular weight: Translated: 31614; Mature: 31482

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: ACT_SITE 76-76 ACT_SITE 226-226

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAP
CCCCCCCHHHCCCCCEEEEEEHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC
VKMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTL
EEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCEEEE
AKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDDVEQAP
EEEECCCCCCCCCCCCCCCCCCCCEEECCEEECCCEEEEEEEECCCCEEEEEEECCCCCC
LTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILN
CHHHHHHHHHHHHCHHHCCCCEEEEECCCCCCEEEEECCCCCHHHCCCCHHHHHHHHHHC
GKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYKIEA
CHHHCCCEEEEEEECCCEEEEEECCCCEEEECCHHHHHHCCEEEEECC
>Mature Secondary Structure 
SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAP
CCCCCCHHHCCCCCEEEEEEHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC
VKMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTL
EEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCEEEE
AKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDDVEQAP
EEEECCCCCCCCCCCCCCCCCCCCEEECCEEECCCEEEEEEEECCCCEEEEEEECCCCCC
LTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILN
CHHHHHHHHHHHHCHHHCCCCEEEEECCCCCCEEEEECCCCCHHHCCCCHHHHHHHHHHC
GKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYKIEA
CHHHCCCEEEEEEECCCEEEEEECCCCEEEECCHHHHHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA