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The map label for this gene is liaH [H]

Identifier: 49187691

GI number: 49187691

Start: 4586169

End: 4586834

Strand: Reverse

Name: liaH [H]

Synonym: BAS4700

Alternate gene names: 49187691

Gene position: 4586834-4586169 (Counterclockwise)

Preceding gene: 49187693

Following gene: 49187690

Centisome position: 87.72

GC content: 38.29

Gene sequence:

>666_bases
ATGTCTGTATTTAAACGATTACGAGATTTAACAATGTCGAATGTGTATTCATTAATTGAAAAAGCGGAAGATCCAGTTAA
GATGACGGATCAATATTTACGCGATATGCAAGCGGATGTACAAGAAGCAGAGAAAAGTGTAGCGGCTCAAATTGCACTTG
AGAAGAAATTCAAAATCTTATTTGAAGAGCAAGAAGCACTTGTGAAAAAACGTGAAGAGCAAGCTCATATGGCTGTTCAA
GCAAGCAATCTTGACCTTGCGCGTCGTGCTCTTGAAGAAAAGCAAAATGCAGAGCAAAAGATGAATGAGTATAAAGCAAG
CTATGAGCAAAACAAAGCCGCTGCTGATAATCTTCGCCTGAAGCTAGAAGAAATGCGTAAGCAATTAACTGAGCTGAAAA
ATAAACGTGAGACACTTGTAGCACGTGTAAATGCGGCGAAAGCACAAAAGAATATTAATCAGGCGATGTCTGGATTTGAT
TCAAACTCAGCGAAAGCTGGTTTAAGCCGTATGGAAGAGAAAGCTCTTCAATTAGAGGCTGAAGCAGAAGCAAGCGGTGA
AGTGTACAAAAAAGAAAAGTCATTAGATGATGAATTCGCAAGCTTAAACAAAAATTCTGCTGTTGATGATGAATTAGCTC
GTATTATGAAGCAGTATGAGAAATAA

Upstream 100 bases:

>100_bases
CACATAGCTGTAAAAATGACTATTCTTTACTGTTAAGGAAGATTTTTATTTTTCCAAATAGTGAATTTAAAATATGAGGT
ATATCATAGGAGGAATTTAG

Downstream 100 bases:

>100_bases
TATAAAATAGAGACAAATGAACCGACATGTCTAAACAAATTCATGTCGGTTTTCTATTACTTTTTAGAGGAGGTTTTGCA
ATGACATGGATGAATGTAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MSVFKRLRDLTMSNVYSLIEKAEDPVKMTDQYLRDMQADVQEAEKSVAAQIALEKKFKILFEEQEALVKKREEQAHMAVQ
ASNLDLARRALEEKQNAEQKMNEYKASYEQNKAAADNLRLKLEEMRKQLTELKNKRETLVARVNAAKAQKNINQAMSGFD
SNSAKAGLSRMEEKALQLEAEAEASGEVYKKEKSLDDEFASLNKNSAVDDELARIMKQYEK

Sequences:

>Translated_221_residues
MSVFKRLRDLTMSNVYSLIEKAEDPVKMTDQYLRDMQADVQEAEKSVAAQIALEKKFKILFEEQEALVKKREEQAHMAVQ
ASNLDLARRALEEKQNAEQKMNEYKASYEQNKAAADNLRLKLEEMRKQLTELKNKRETLVARVNAAKAQKNINQAMSGFD
SNSAKAGLSRMEEKALQLEAEAEASGEVYKKEKSLDDEFASLNKNSAVDDELARIMKQYEK
>Mature_220_residues
SVFKRLRDLTMSNVYSLIEKAEDPVKMTDQYLRDMQADVQEAEKSVAAQIALEKKFKILFEEQEALVKKREEQAHMAVQA
SNLDLARRALEEKQNAEQKMNEYKASYEQNKAAADNLRLKLEEMRKQLTELKNKRETLVARVNAAKAQKNINQAMSGFDS
NSAKAGLSRMEEKALQLEAEAEASGEVYKKEKSLDDEFASLNKNSAVDDELARIMKQYEK

Specific function: The Phage Shock Protein (Psp) Operon (Pspabce) May Play A Significant Role In The Competition For Survival Under Nutrient- Or Energy-Limited Conditions. Pspa Has A Role As A Negative Regulator, Is Required For Efficient Translocation And Has An Unknown Fu

COG id: COG1842

COG function: function code KT; Phage shock protein A (IM30), suppresses sigma54-dependent transcription

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PspA/IM30 family [H]

Homologues:

Organism=Escherichia coli, GI2367118, Length=228, Percent_Identity=31.140350877193, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007157 [H]

Pfam domain/function: PF04012 PspA_IM30 [H]

EC number: NA

Molecular weight: Translated: 25289; Mature: 25158

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVFKRLRDLTMSNVYSLIEKAEDPVKMTDQYLRDMQADVQEAEKSVAAQIALEKKFKIL
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FEEQEALVKKREEQAHMAVQASNLDLARRALEEKQNAEQKMNEYKASYEQNKAAADNLRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLEEMRKQLTELKNKRETLVARVNAAKAQKNINQAMSGFDSNSAKAGLSRMEEKALQLEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
EAEASGEVYKKEKSLDDEFASLNKNSAVDDELARIMKQYEK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SVFKRLRDLTMSNVYSLIEKAEDPVKMTDQYLRDMQADVQEAEKSVAAQIALEKKFKIL
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FEEQEALVKKREEQAHMAVQASNLDLARRALEEKQNAEQKMNEYKASYEQNKAAADNLRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLEEMRKQLTELKNKRETLVARVNAAKAQKNINQAMSGFDSNSAKAGLSRMEEKALQLEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
EAEASGEVYKKEKSLDDEFASLNKNSAVDDELARIMKQYEK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377; 12207695 [H]