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The map label for this gene is cydB [H]

Identifier: 49187682

GI number: 49187682

Start: 4578773

End: 4579801

Strand: Direct

Name: cydB [H]

Synonym: BAS4691

Alternate gene names: 49187682

Gene position: 4578773-4579801 (Clockwise)

Preceding gene: 49187681

Following gene: 49187685

Centisome position: 87.57

GC content: 37.03

Gene sequence:

>1029_bases
ATGTCTCATGATATGCTTGCAATCATCTGGTTTGGTCTATGGGGCGTGATTTGGACAGTTTACTTCATTCTTGATGGGTA
TGCACTTGGTAACGGAATGATTTTTCCTTTCGTTACGAAAGATCGACAAGAACAAAATCAATTACAAGAAGCAATTGGCC
CGTTCTGGGGCGGTAATGAAGTGTGGTTAATTACAGCTGGTGGTGCAACATTTGCTGCCTTCCCAGTCACTTATGCAAAT
ATGTTTAGTTATTTATATACACCGTTATTCTTAGTATTACTTGCACTATTTGCTCGGGCTGCTGGACTGGAATTCATGCA
TAAAGATGATTCACCAATTTGGCAAAAAACTTGTAAATGGGCATTTGCAATTGGTAGTTTCTTAATTGCTTTCCTATTCG
GTGTTACATTTGCTAATCTTTATTACGGACTGCAAATCGGAAAAAATGGCTATGAAGGAAATTTACTTAGCTTACTAAAT
CATTACGGTATTTTAGGAGGGTTGTTCTTCACTGCTATATTCGTCGTATCCGGTGCCCTTTGGGTTATGATTAAAACGAC
TGGTGAAGTATCCGACCGTGCTTATAAAATCGCAAGACCATTTTCAATGGCAGCTGCTATCATTTTAGCTATTTTCTATG
TAGCAACTGCAAATCGTACAAATTTATTCCAAAACTTCACAGAGTACCCGGTACTATTCATTCTTCCAGTACTTGCAATG
TTAATGAGTGTACTCGCGCTTATTATGGTGTACAAACATAAAATCGGTCTTGCATTCACATTCGTTTGCTTAACAATCGC
AATGTTTATGACAACTGGCTTTGCGGGTATGTTCCCAAGAATGTTACCATCTCGTATTAATGATGCTTATAGTACAACGT
TATACAACGCAGCTGGTAGTCAATTAAACTTAAAAATTATGTTCTTCGTTGCAATGGTTATGGTACCAATTGTTATTGGA
TATCAACTTTGGAGTTACAGTATCTTTAAAAATAAAATTCATAAAGACTCTGCTAAAGGGTATCACTAA

Upstream 100 bases:

>100_bases
TATACTTTACTTTTAATCGCAGACGTATATTTAATGCTGAAGTTCGCGAAAAAAGGACCAGCAGCATTAGAAGAACCTGC
TACTAAGGGAGGCGTGGCTC

Downstream 100 bases:

>100_bases
AATGAAAAAAGACACTTCGTTTGAAGTGTCTTTTTTCTACGTATGATTTTCGATAGGATGTTATATTTCTAATCTAACAA
CTATAATACAGAAGAATCAT

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSHDMLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQEQNQLQEAIGPFWGGNEVWLITAGGATFAAFPVTYAN
MFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCKWAFAIGSFLIAFLFGVTFANLYYGLQIGKNGYEGNLLSLLN
HYGILGGLFFTAIFVVSGALWVMIKTTGEVSDRAYKIARPFSMAAAIILAIFYVATANRTNLFQNFTEYPVLFILPVLAM
LMSVLALIMVYKHKIGLAFTFVCLTIAMFMTTGFAGMFPRMLPSRINDAYSTTLYNAAGSQLNLKIMFFVAMVMVPIVIG
YQLWSYSIFKNKIHKDSAKGYH

Sequences:

>Translated_342_residues
MSHDMLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQEQNQLQEAIGPFWGGNEVWLITAGGATFAAFPVTYAN
MFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCKWAFAIGSFLIAFLFGVTFANLYYGLQIGKNGYEGNLLSLLN
HYGILGGLFFTAIFVVSGALWVMIKTTGEVSDRAYKIARPFSMAAAIILAIFYVATANRTNLFQNFTEYPVLFILPVLAM
LMSVLALIMVYKHKIGLAFTFVCLTIAMFMTTGFAGMFPRMLPSRINDAYSTTLYNAAGSQLNLKIMFFVAMVMVPIVIG
YQLWSYSIFKNKIHKDSAKGYH
>Mature_341_residues
SHDMLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQEQNQLQEAIGPFWGGNEVWLITAGGATFAAFPVTYANM
FSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCKWAFAIGSFLIAFLFGVTFANLYYGLQIGKNGYEGNLLSLLNH
YGILGGLFFTAIFVVSGALWVMIKTTGEVSDRAYKIARPFSMAAAIILAIFYVATANRTNLFQNFTEYPVLFILPVLAML
MSVLALIMVYKHKIGLAFTFVCLTIAMFMTTGFAGMFPRMLPSRINDAYSTTLYNAAGSQLNLKIMFFVAMVMVPIVIGY
QLWSYSIFKNKIHKDSAKGYH

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=375, Percent_Identity=31.2, Blast_Score=191, Evalue=7e-50,
Organism=Escherichia coli, GI1787213, Length=372, Percent_Identity=29.5698924731183, Blast_Score=171, Evalue=5e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 38394; Mature: 38263

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHDMLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQEQNQLQEAIGPFWGGNE
CCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCE
VWLITAGGATFAAFPVTYANMFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCKW
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHH
AFAIGSFLIAFLFGVTFANLYYGLQIGKNGYEGNLLSLLNHYGILGGLFFTAIFVVSGAL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHH
WVMIKTTGEVSDRAYKIARPFSMAAAIILAIFYVATANRTNLFQNFTEYPVLFILPVLAM
EEEEECCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHH
LMSVLALIMVYKHKIGLAFTFVCLTIAMFMTTGFAGMFPRMLPSRINDAYSTTLYNAAGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCC
QLNLKIMFFVAMVMVPIVIGYQLWSYSIFKNKIHKDSAKGYH
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SHDMLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQEQNQLQEAIGPFWGGNE
CCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCE
VWLITAGGATFAAFPVTYANMFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCKW
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHH
AFAIGSFLIAFLFGVTFANLYYGLQIGKNGYEGNLLSLLNHYGILGGLFFTAIFVVSGAL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHH
WVMIKTTGEVSDRAYKIARPFSMAAAIILAIFYVATANRTNLFQNFTEYPVLFILPVLAM
EEEEECCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHH
LMSVLALIMVYKHKIGLAFTFVCLTIAMFMTTGFAGMFPRMLPSRINDAYSTTLYNAAGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCC
QLNLKIMFFVAMVMVPIVIGYQLWSYSIFKNKIHKDSAKGYH
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]