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The map label for this gene is ytkD [H]

Identifier: 49187674

GI number: 49187674

Start: 4573769

End: 4574248

Strand: Reverse

Name: ytkD [H]

Synonym: BAS4683

Alternate gene names: 49187674

Gene position: 4574248-4573769 (Counterclockwise)

Preceding gene: 49187676

Following gene: 49187673

Centisome position: 87.48

GC content: 37.5

Gene sequence:

>480_bases
ATGTACAAATTTAAAGATTATTACCACAACACTGTACAATTATCGTTTGAACGTTATCCATTTTCTCCTGAGCCAAAGCA
TGTTTGGGTTGTATGCCGGTACGGGGATCAATGGTTATTAACGCATCATTTACGTCGCGGTCTTGAATTTCCAGGTGGAA
AAGTAGAACTAGGGGAAACACCGGAAGAAGCGGCAGTTCGAGAGGTTCATGAAGAAACCGGCGGCATAGTTTCTGATTTA
ACTTACTTAGGACAATATAAAGTATCTGGAAAAGACAAAATAATCATTAAAAACATTTATTTTGCAACAATTAGTGCGGT
AGAACAACATACGCATTACGAAGAAACGAAAGGATCTGTTTTATTAACAGACATTCCTGACAACATTAAAACGGATAGAA
AATTTAGCTTTATAATGCGCGACGATGTATTGGCGCGTACGATGAAACATATAGAAGAAATCGGCTGCTTTACGAAGTAA

Upstream 100 bases:

>100_bases
AATCAATGGATTATAATTGGATAATATTATGCAGAAAAGCGAGAATATGCTACAATTTGTGGTAGGAAAAACTTGTAACC
ATCAATAGGGGAGTAATGGC

Downstream 100 bases:

>100_bases
AGTGGCCGGTTTCTTTTTTTGTATAAGAATAAATGTAAATATATCTTTACGTGATTTTGGATATATTATACAATTTTTGT
AAAGATATATTTACATTTCG

Product: mutT/nudix family protein

Products: 8-Oxo-Dgmp; Pyrophosphate. [C]

Alternate protein names: 8-oxo-dGTPase; dGTP pyrophosphohydrolase [H]

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MYKFKDYYHNTVQLSFERYPFSPEPKHVWVVCRYGDQWLLTHHLRRGLEFPGGKVELGETPEEAAVREVHEETGGIVSDL
TYLGQYKVSGKDKIIIKNIYFATISAVEQHTHYEETKGSVLLTDIPDNIKTDRKFSFIMRDDVLARTMKHIEEIGCFTK

Sequences:

>Translated_159_residues
MYKFKDYYHNTVQLSFERYPFSPEPKHVWVVCRYGDQWLLTHHLRRGLEFPGGKVELGETPEEAAVREVHEETGGIVSDL
TYLGQYKVSGKDKIIIKNIYFATISAVEQHTHYEETKGSVLLTDIPDNIKTDRKFSFIMRDDVLARTMKHIEEIGCFTK
>Mature_159_residues
MYKFKDYYHNTVQLSFERYPFSPEPKHVWVVCRYGDQWLLTHHLRRGLEFPGGKVELGETPEEAAVREVHEETGGIVSDL
TYLGQYKVSGKDKIIIKNIYFATISAVEQHTHYEETKGSVLLTDIPDNIKTDRKFSFIMRDDVLARTMKHIEEIGCFTK

Specific function: Involved in the GO system responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine, 8- oxo-dGTP) from DNA and the nucleotide pool. 8-oxo-dGTP is inserted opposite dA and dC residues of template DNA with almost equal effici

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020476
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR014078 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: 3.6.1.- [C]

Molecular weight: Translated: 18544; Mature: 18544

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKFKDYYHNTVQLSFERYPFSPEPKHVWVVCRYGDQWLLTHHLRRGLEFPGGKVELGET
CCCCHHHCCCEEEEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCEEECCCC
PEEAAVREVHEETGGIVSDLTYLGQYKVSGKDKIIIKNIYFATISAVEQHTHYEETKGSV
CHHHHHHHHHHHHCCHHHHHHHHCEEEECCCCEEEEEEHHHHHHHHHHHHHCHHCCCCCE
LLTDIPDNIKTDRKFSFIMRDDVLARTMKHIEEIGCFTK
EEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYKFKDYYHNTVQLSFERYPFSPEPKHVWVVCRYGDQWLLTHHLRRGLEFPGGKVELGET
CCCCHHHCCCEEEEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCEEECCCC
PEEAAVREVHEETGGIVSDLTYLGQYKVSGKDKIIIKNIYFATISAVEQHTHYEETKGSV
CHHHHHHHHHHHHCCHHHHHHHHCEEEECCCCEEEEEEHHHHHHHHHHHHHCHHCCCCCE
LLTDIPDNIKTDRKFSFIMRDDVLARTMKHIEEIGCFTK
EEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 8-Oxo-Dgtp; H2O [C]

Specific reaction: 8-Oxo-Dgtp + H2O = 8-Oxo-Dgmp + Pyrophosphate. [C]

General reaction: Hydrolase; Acting on acid anhydrides; In phosphorus-containing anhydrides [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]