Click here to switch to the map view.

The map label for this gene is 49187461

Identifier: 49187461

GI number: 49187461

Start: 4377934

End: 4378551

Strand: Direct

Name: 49187461

Synonym: BAS4466

Alternate gene names: NA

Gene position: 4377934-4378551 (Clockwise)

Preceding gene: 49187458

Following gene: 49187485

Centisome position: 83.73

GC content: 36.57

Gene sequence:

>618_bases
ATGTCTATTAAAAATACAAATGATCCACGTGTAAAGCGGACGAGACAACTCATACAGGATGCTTTTGTCGCTTTAGTAGG
CGAAAAAGGGTTTGAAAATGTAACTGTTCAACATATTGCAGAACGTGCTCCTGTAAATCGTGCTACGTTTTATAGCCATT
ACCACGATAAATATGACTTATTAGACAAAAGCATTGAAGAAATGTTAGAGAAGCTAACAGAAGTTATTAAACCGAAAAAT
AGAAATAAAGAAGATTTTCAACTTGCCTTTGATTCACCACACCCAAATTTCTTAGCACTGTTTGAACATATCGCAGAAAA
TGCGAATTTCTATAACGTCATGCTTGGTGATAAAGCTGCCGGAAACTATACGTATAAGATGATGAAAGCAATTCAAACAC
ATTTAACATTAAGCCTCTCTATTTCACAACCTAACGATGAAAAACTAATGGTTCCGCGTGATATTCTCATTAGTTATGTT
ACCGGTGCCCACCTCGGCATGATTATGTCATGGCTAAAGAGAGGAATGATATATACCCCGCATTTTATGGCCATGCAATT
AACTCGTTTAATCATTTTAGGAGCTCATACTGCAGCGGGATTAGAACGACCTTTTTAA

Upstream 100 bases:

>100_bases
AAATCTACAACCGACAATTTACGTATGAAATGTCGCTTAAACAACAATATAATACCAATATGTTGCTTAAGTATAGAAAA
TTAAACGAGGGGAAATAAAA

Downstream 100 bases:

>100_bases
AACATAAAAAGCGAAGGAGAGGCTCCTTCGCTTTTTCTATTAATTAAATGTAATGTTATGTACAGCCTCTTTATCAAGAC
GTTTAATAACTTCTACAATT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; AcrR Family Transcriptional Regulator; Regulatory Protein; Transcription Regulator; TetR Family Regulatory Protein; Regulatory Protein TetR Family Protein; TetR Family HTH Transcriptional Regulator; Transcriptional Regulator Tetr Family; TetR Family Regulatory Protein Of MDR Cluster; Regulatory Protein TetR

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSIKNTNDPRVKRTRQLIQDAFVALVGEKGFENVTVQHIAERAPVNRATFYSHYHDKYDLLDKSIEEMLEKLTEVIKPKN
RNKEDFQLAFDSPHPNFLALFEHIAENANFYNVMLGDKAAGNYTYKMMKAIQTHLTLSLSISQPNDEKLMVPRDILISYV
TGAHLGMIMSWLKRGMIYTPHFMAMQLTRLIILGAHTAAGLERPF

Sequences:

>Translated_205_residues
MSIKNTNDPRVKRTRQLIQDAFVALVGEKGFENVTVQHIAERAPVNRATFYSHYHDKYDLLDKSIEEMLEKLTEVIKPKN
RNKEDFQLAFDSPHPNFLALFEHIAENANFYNVMLGDKAAGNYTYKMMKAIQTHLTLSLSISQPNDEKLMVPRDILISYV
TGAHLGMIMSWLKRGMIYTPHFMAMQLTRLIILGAHTAAGLERPF
>Mature_204_residues
SIKNTNDPRVKRTRQLIQDAFVALVGEKGFENVTVQHIAERAPVNRATFYSHYHDKYDLLDKSIEEMLEKLTEVIKPKNR
NKEDFQLAFDSPHPNFLALFEHIAENANFYNVMLGDKAAGNYTYKMMKAIQTHLTLSLSISQPNDEKLMVPRDILISYVT
GAHLGMIMSWLKRGMIYTPHFMAMQLTRLIILGAHTAAGLERPF

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23527; Mature: 23395

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKNTNDPRVKRTRQLIQDAFVALVGEKGFENVTVQHIAERAPVNRATFYSHYHDKYDL
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LDKSIEEMLEKLTEVIKPKNRNKEDFQLAFDSPHPNFLALFEHIAENANFYNVMLGDKAA
HHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCC
GNYTYKMMKAIQTHLTLSLSISQPNDEKLMVPRDILISYVTGAHLGMIMSWLKRGMIYTP
CHHHHHHHHHHHHHHEEEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HFMAMQLTRLIILGAHTAAGLERPF
HHHHHHHHHHHHHCCCHHCCCCCCC
>Mature Secondary Structure 
SIKNTNDPRVKRTRQLIQDAFVALVGEKGFENVTVQHIAERAPVNRATFYSHYHDKYDL
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LDKSIEEMLEKLTEVIKPKNRNKEDFQLAFDSPHPNFLALFEHIAENANFYNVMLGDKAA
HHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCC
GNYTYKMMKAIQTHLTLSLSISQPNDEKLMVPRDILISYVTGAHLGMIMSWLKRGMIYTP
CHHHHHHHHHHHHHHEEEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HFMAMQLTRLIILGAHTAAGLERPF
HHHHHHHHHHHHHCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA