Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is yfmC [H]
Identifier: 49187419
GI number: 49187419
Start: 4333916
End: 4334890
Strand: Direct
Name: yfmC [H]
Synonym: BAS4424
Alternate gene names: 49187419
Gene position: 4333916-4334890 (Clockwise)
Preceding gene: 49187410
Following gene: 49187420
Centisome position: 82.89
GC content: 33.95
Gene sequence:
>975_bases ATGAAGAAAATTCTCAGTATTTTCATAGTAGTTTTTCTATTCGCTGTTGGATGCGGACAGCAAAAAGAGGAGAAAAAAGA AACAAAAGCGGACAATAAAAATCAAGCTATAACAATTAAACACGCTGAAGGGGAAACGAAGTTAGATAAACCAGCGAAAA AAGTAGTTGTACTTGAATGGGTATATTCAGAAGACTTATTAGCACTTGGTGTTCAGCCAGTAGGGATGGCAGACATTAAG AATTATAATAAATGGGTAAATACAAAAACAAAACCGAGTAAAGATGTTGTAGATGTCGGGACACGTCAACAACCAAACTT AGAAGAAATTAGCCGTTTAAAACCAGATTTAATTATCACAGCTTCATTCCGTGGTAAAGCAATTAAAAATGAATTAGAAC AAATTGCACCAACAGTTATGTTTGATCCATCAACAAGCAATAACGATCACTTTGCTGAAATGACAGAAACATTTAAACAA ATTGCAAAAGCAGTTGGAAAAGAAGAAGAAGGTAAAAAAGTATTAGCTGATATGGATAAAGCATTCGCTGATGCAAAAGC AAAAATTGAAAAAGCAGACTTAAAAGATAAAAACATCGCAATGGCACAAGCATTTACTGCTAAAAATGTGCCAACATTCC GTATCTTAACTGACAATTCTTTAGCTTTACAAGTTACAAAAAAATTAGGTTTAACAAATACTTTTGAAGCAGGAAAATCT GAGCCTGATGGTTTCAAACAAACAACTGTGGAATCATTACAAAGTGTACAAGATTCAAACTTCATTTACATTGTAGCGGA TGAAGATAACATTTTTGACACGCAACTAAAAGGCAACCCTGCTTGGGAAGAATTAAAGTTTAAAAAAGAAAACAAAATGT ATAAATTAAAAGGCGACACTTGGATTTTCGGTGGTCCTGAGTCTGCAACATCTTTAGCAACACAAGTAGCAGATGTAATG ACAGCGAAGAAGTGA
Upstream 100 bases:
>100_bases GACACTTAAAATATCCTCATAGTATAATTTGGGTGTTGTAATTGATAACTATTTTCATTTATGGTGCTAGTTACAAAAAT ACTTAATTTGGGGGCAGAAG
Downstream 100 bases:
>100_bases TTACACGATGAATAACTTACAACATACACTTCGAGCAAGTCTTGTATTCGGAGGAGGAGGAGCTCTCTTGCTCCTCCTTT TCTTTATTCATATCGGACAA
Product: iron compound ABC transporter iron compound-binding protein
Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]
Alternate protein names: Ferric-citrate-binding protein [H]
Number of amino acids: Translated: 324; Mature: 324
Protein sequence:
>324_residues MKKILSIFIVVFLFAVGCGQQKEEKKETKADNKNQAITIKHAEGETKLDKPAKKVVVLEWVYSEDLLALGVQPVGMADIK NYNKWVNTKTKPSKDVVDVGTRQQPNLEEISRLKPDLIITASFRGKAIKNELEQIAPTVMFDPSTSNNDHFAEMTETFKQ IAKAVGKEEEGKKVLADMDKAFADAKAKIEKADLKDKNIAMAQAFTAKNVPTFRILTDNSLALQVTKKLGLTNTFEAGKS EPDGFKQTTVESLQSVQDSNFIYIVADEDNIFDTQLKGNPAWEELKFKKENKMYKLKGDTWIFGGPESATSLATQVADVM TAKK
Sequences:
>Translated_324_residues MKKILSIFIVVFLFAVGCGQQKEEKKETKADNKNQAITIKHAEGETKLDKPAKKVVVLEWVYSEDLLALGVQPVGMADIK NYNKWVNTKTKPSKDVVDVGTRQQPNLEEISRLKPDLIITASFRGKAIKNELEQIAPTVMFDPSTSNNDHFAEMTETFKQ IAKAVGKEEEGKKVLADMDKAFADAKAKIEKADLKDKNIAMAQAFTAKNVPTFRILTDNSLALQVTKKLGLTNTFEAGKS EPDGFKQTTVESLQSVQDSNFIYIVADEDNIFDTQLKGNPAWEELKFKKENKMYKLKGDTWIFGGPESATSLATQVADVM TAKK >Mature_324_residues MKKILSIFIVVFLFAVGCGQQKEEKKETKADNKNQAITIKHAEGETKLDKPAKKVVVLEWVYSEDLLALGVQPVGMADIK NYNKWVNTKTKPSKDVVDVGTRQQPNLEEISRLKPDLIITASFRGKAIKNELEQIAPTVMFDPSTSNNDHFAEMTETFKQ IAKAVGKEEEGKKVLADMDKAFADAKAKIEKADLKDKNIAMAQAFTAKNVPTFRILTDNSLALQVTKKLGLTNTFEAGKS EPDGFKQTTVESLQSVQDSNFIYIVADEDNIFDTQLKGNPAWEELKFKKENKMYKLKGDTWIFGGPESATSLATQVADVM TAKK
Specific function: Part of the ABC transporter complex yfmCDEF involved in citrate-dependent Fe(3+) import. Binds citrate-dependent Fe(3+) and delivers it to the surface of yfmDE (Probable) [H]
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]
Homologues:
Organism=Escherichia coli, GI87082411, Length=270, Percent_Identity=28.5185185185185, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786346, Length=257, Percent_Identity=24.9027237354086, Blast_Score=86, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002491 [H]
Pfam domain/function: PF01497 Peripla_BP_2 [H]
EC number: NA
Molecular weight: Translated: 36075; Mature: 36075
Theoretical pI: Translated: 8.84; Mature: 8.84
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKILSIFIVVFLFAVGCGQQKEEKKETKADNKNQAITIKHAEGETKLDKPAKKVVVLEW CHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEE VYSEDLLALGVQPVGMADIKNYNKWVNTKTKPSKDVVDVGTRQQPNLEEISRLKPDLIIT ECCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCHHHHHHCCCCEEEE ASFRGKAIKNELEQIAPTVMFDPSTSNNDHFAEMTETFKQIAKAVGKEEEGKKVLADMDK ECCCCHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH AFADAKAKIEKADLKDKNIAMAQAFTAKNVPTFRILTDNSLALQVTKKLGLTNTFEAGKS HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCEEEEEHHHCCCCCCCCCCCC EPDGFKQTTVESLQSVQDSNFIYIVADEDNIFDTQLKGNPAWEELKFKKENKMYKLKGDT CCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHCCCCEEEECCCE WIFGGPESATSLATQVADVMTAKK EEECCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKKILSIFIVVFLFAVGCGQQKEEKKETKADNKNQAITIKHAEGETKLDKPAKKVVVLEW CHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEE VYSEDLLALGVQPVGMADIKNYNKWVNTKTKPSKDVVDVGTRQQPNLEEISRLKPDLIIT ECCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCHHHHHHCCCCEEEE ASFRGKAIKNELEQIAPTVMFDPSTSNNDHFAEMTETFKQIAKAVGKEEEGKKVLADMDK ECCCCHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH AFADAKAKIEKADLKDKNIAMAQAFTAKNVPTFRILTDNSLALQVTKKLGLTNTFEAGKS HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCEEEEEHHHCCCCCCCCCCCC EPDGFKQTTVESLQSVQDSNFIYIVADEDNIFDTQLKGNPAWEELKFKKENKMYKLKGDT CCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHCCCCEEEECCCE WIFGGPESATSLATQVADVMTAKK EEECCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]
Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9272861; 9384377 [H]