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The map label for this gene is sdhC [H]

Identifier: 49187409

GI number: 49187409

Start: 4323428

End: 4324054

Strand: Reverse

Name: sdhC [H]

Synonym: BAS4414

Alternate gene names: 49187409

Gene position: 4324054-4323428 (Counterclockwise)

Preceding gene: 49187411

Following gene: 49187408

Centisome position: 82.7

GC content: 38.92

Gene sequence:

>627_bases
ATGAAAGGCCGCGAGTATACGTTTCGTAAGTGGCACTCATTAATGGGGGTCATCCCGGTTGGTGTCTTTTTGACGCAACA
TTTAATTGTAAACAACTTTGCAACACGAGGAGCAGAGGCTTTTAACAAAGCTGCAGGCTTTATGGAGCTCCTTCCATTCC
GGTATGCGCTAGAAATTTTCATTATCTTTTTACCAATACTGTACCATGCTATATATGGCTTATATATTGCATTTACAGCT
AAGAACAATGCGGTTTCTTACGGTTATTTCCGTAATTGGATGTTCGTCTTCCAAAGAATTTCAGGTATCGTTACGCTGAT
TTTCATTGCTTGGCACGTCTGGGAAACTCGTATTCAAGCAATGTTAGGTAAAGAGGTAAACTATGATATGATGGCTGATA
TTTTAAACAATCCAGCTATGTTCGCATTCTACTTAGTTGGTGTTGTTTCAACAATTTTCCACTTTGCAAATGGACTATGG
ACATTCTGCATTAGCTGGGGAATTACAGTATCACCACGTTCACAAAGAATCTCTACTTATGTAACATTAGCTATTTTCTT
AGGTCTATCTTATGTAGGTGTGAGTGCATTATTAGCGTTCATCGATCCACAGCTAGCAAACCAGTAA

Upstream 100 bases:

>100_bases
TAATTTTTTCAGTTTTTCTTATGCCAATAGTGAAAAAACATTATTGCCATAAACTAATCTGAAAACAGCAGTCAATCACT
CAAGGGGGGGTAATGGGGAC

Downstream 100 bases:

>100_bases
GGAGTGGGAGAGCATGAAAGGGAAACTTATAGTAGTCGGCGGTGGCTTGGCTGGCTTAATGGCAACGATTAAAGCGGCGG
AAGCAGGAGTAAATGTTGAA

Product: succinate dehydrogenase, cytochrome b558 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-558 [H]

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MKGREYTFRKWHSLMGVIPVGVFLTQHLIVNNFATRGAEAFNKAAGFMELLPFRYALEIFIIFLPILYHAIYGLYIAFTA
KNNAVSYGYFRNWMFVFQRISGIVTLIFIAWHVWETRIQAMLGKEVNYDMMADILNNPAMFAFYLVGVVSTIFHFANGLW
TFCISWGITVSPRSQRISTYVTLAIFLGLSYVGVSALLAFIDPQLANQ

Sequences:

>Translated_208_residues
MKGREYTFRKWHSLMGVIPVGVFLTQHLIVNNFATRGAEAFNKAAGFMELLPFRYALEIFIIFLPILYHAIYGLYIAFTA
KNNAVSYGYFRNWMFVFQRISGIVTLIFIAWHVWETRIQAMLGKEVNYDMMADILNNPAMFAFYLVGVVSTIFHFANGLW
TFCISWGITVSPRSQRISTYVTLAIFLGLSYVGVSALLAFIDPQLANQ
>Mature_208_residues
MKGREYTFRKWHSLMGVIPVGVFLTQHLIVNNFATRGAEAFNKAAGFMELLPFRYALEIFIIFLPILYHAIYGLYIAFTA
KNNAVSYGYFRNWMFVFQRISGIVTLIFIAWHVWETRIQAMLGKEVNYDMMADILNNPAMFAFYLVGVVSTIFHFANGLW
TFCISWGITVSPRSQRISTYVTLAIFLGLSYVGVSALLAFIDPQLANQ

Specific function: Di-heme cytochrome of the succinate dehydrogenase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b558 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011138
- InterPro:   IPR016002
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 23801; Mature: 23801

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGREYTFRKWHSLMGVIPVGVFLTQHLIVNNFATRGAEAFNKAAGFMELLPFRYALEIF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIFLPILYHAIYGLYIAFTAKNNAVSYGYFRNWMFVFQRISGIVTLIFIAWHVWETRIQA
HHHHHHHHHHHHHHHHHEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLGKEVNYDMMADILNNPAMFAFYLVGVVSTIFHFANGLWTFCISWGITVSPRSQRISTY
HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHH
VTLAIFLGLSYVGVSALLAFIDPQLANQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKGREYTFRKWHSLMGVIPVGVFLTQHLIVNNFATRGAEAFNKAAGFMELLPFRYALEIF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIFLPILYHAIYGLYIAFTAKNNAVSYGYFRNWMFVFQRISGIVTLIFIAWHVWETRIQA
HHHHHHHHHHHHHHHHHEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLGKEVNYDMMADILNNPAMFAFYLVGVVSTIFHFANGLWTFCISWGITVSPRSQRISTY
HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHH
VTLAIFLGLSYVGVSALLAFIDPQLANQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3086287; 8969504; 9384377; 3027051; 3036777; 2120540 [H]