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The map label for this gene is yodJ [H]

Identifier: 49187405

GI number: 49187405

Start: 4319503

End: 4320282

Strand: Direct

Name: yodJ [H]

Synonym: BAS4410

Alternate gene names: 49187405

Gene position: 4319503-4320282 (Clockwise)

Preceding gene: 49187401

Following gene: 49187410

Centisome position: 82.61

GC content: 36.41

Gene sequence:

>780_bases
ATGAAAAAAATAATTATTATTTCTGCCGCTACTATTGTAATCGGTATCACATCTTTCGCTTATTTCGGTTCCAAATCACC
ACTACAAAACGAGGCGAGAGCTGTCGAAAGTCAACAACATAGTAATCACCAAAAAGAAGAGATTCCTGCTTTTCCAAAAG
CTGATCATAACGCCAAGAAGCTAGACAATGATTTTTCCGTTGTAACAAATCCAGATTCTAACCTTGTATTAGTTAATAAA
CATCGAAAACTACCAGATGGATACACACCTGAAGACTTAACAAGACCAAATGTACCATTTACTAGTCCGAAAGATAAAGA
AAAAACATTGCTACGCAAAGATGCTGCAGATGCGCTTGAAAATATGTTTGAAGCAGCAAAGAAAGAAGGACTTGAACTTA
CAGCTGTATCTGGTTATCGTTCATACAAACGCCAAAAATCATTACATGATACATACGTTAGACGTCAAGGAAAAGCCGAG
GCAGATTCAGTAAGCGCTATTCCTGGTACGAGTGAACATCAAACTGGTTTAGCAATGGATATTAGTTCAAAATCTGCTAA
ATTCCAATTAGAGCCTATTTTTGGAGAGACAGCCGAAGGTAAATGGGTTGCAAAACATGCTCATGAATTTGGCTTTGTCA
TTCGTTATTTAGAAGATAAAACAGAAACAACCGAATATTCATATGAACCGTGGCATTTGCGCTACGTTGGAAATCCATAC
GCTACATACATATATAAACATCATTTAACATTAGAAGAAGCGATGGAAGACAAAAAATAA

Upstream 100 bases:

>100_bases
TCTATTACGTTACGACTCTTATATTTCTTTTTCAACAAACTAGACTTATAATAAAAACAATACATATTCTATTAAGAAAG
GATTGTGATTACAAGGCATC

Downstream 100 bases:

>100_bases
GAGAGCGTTTTGCTCTCTTATTTTTCTTTCACTCTATTATTGTAGTAATTTTTTCTTCCACTCTTCAGGCCACGGTTCGC
CTCTTCCCGTTTTTTTCGAT

Product: D-alanyl-D-alanine carboxypeptidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MKKIIIISAATIVIGITSFAYFGSKSPLQNEARAVESQQHSNHQKEEIPAFPKADHNAKKLDNDFSVVTNPDSNLVLVNK
HRKLPDGYTPEDLTRPNVPFTSPKDKEKTLLRKDAADALENMFEAAKKEGLELTAVSGYRSYKRQKSLHDTYVRRQGKAE
ADSVSAIPGTSEHQTGLAMDISSKSAKFQLEPIFGETAEGKWVAKHAHEFGFVIRYLEDKTETTEYSYEPWHLRYVGNPY
ATYIYKHHLTLEEAMEDKK

Sequences:

>Translated_259_residues
MKKIIIISAATIVIGITSFAYFGSKSPLQNEARAVESQQHSNHQKEEIPAFPKADHNAKKLDNDFSVVTNPDSNLVLVNK
HRKLPDGYTPEDLTRPNVPFTSPKDKEKTLLRKDAADALENMFEAAKKEGLELTAVSGYRSYKRQKSLHDTYVRRQGKAE
ADSVSAIPGTSEHQTGLAMDISSKSAKFQLEPIFGETAEGKWVAKHAHEFGFVIRYLEDKTETTEYSYEPWHLRYVGNPY
ATYIYKHHLTLEEAMEDKK
>Mature_259_residues
MKKIIIISAATIVIGITSFAYFGSKSPLQNEARAVESQQHSNHQKEEIPAFPKADHNAKKLDNDFSVVTNPDSNLVLVNK
HRKLPDGYTPEDLTRPNVPFTSPKDKEKTLLRKDAADALENMFEAAKKEGLELTAVSGYRSYKRQKSLHDTYVRRQGKAE
ADSVSAIPGTSEHQTGLAMDISSKSAKFQLEPIFGETAEGKWVAKHAHEFGFVIRYLEDKTETTEYSYEPWHLRYVGNPY
ATYIYKHHLTLEEAMEDKK

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 29318; Mature: 29318

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIIIISAATIVIGITSFAYFGSKSPLQNEARAVESQQHSNHQKEEIPAFPKADHNAKK
CCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHH
LDNDFSVVTNPDSNLVLVNKHRKLPDGYTPEDLTRPNVPFTSPKDKEKTLLRKDAADALE
CCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
NMFEAAKKEGLELTAVSGYRSYKRQKSLHDTYVRRQGKAEADSVSAIPGTSEHQTGLAMD
HHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
ISSKSAKFQLEPIFGETAEGKWVAKHAHEFGFVIRYLEDKTETTEYSYEPWHLRYVGNPY
ECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC
ATYIYKHHLTLEEAMEDKK
EEEEEEECCCHHHHHCCCC
>Mature Secondary Structure
MKKIIIISAATIVIGITSFAYFGSKSPLQNEARAVESQQHSNHQKEEIPAFPKADHNAKK
CCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHH
LDNDFSVVTNPDSNLVLVNKHRKLPDGYTPEDLTRPNVPFTSPKDKEKTLLRKDAADALE
CCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
NMFEAAKKEGLELTAVSGYRSYKRQKSLHDTYVRRQGKAEADSVSAIPGTSEHQTGLAMD
HHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
ISSKSAKFQLEPIFGETAEGKWVAKHAHEFGFVIRYLEDKTETTEYSYEPWHLRYVGNPY
ECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC
ATYIYKHHLTLEEAMEDKK
EEEEEEECCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]