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The map label for this gene is radC [C]

Identifier: 49187346

GI number: 49187346

Start: 4259964

End: 4260641

Strand: Reverse

Name: radC [C]

Synonym: BAS4351

Alternate gene names: 49187346

Gene position: 4260641-4259964 (Counterclockwise)

Preceding gene: 49187347

Following gene: 49187345

Centisome position: 81.49

GC content: 40.12

Gene sequence:

>678_bases
ATGAACGGTATTCGTGATGTTGTCAAAGAAGAACAGCCACGGGAGCGTTTATTGTTAGAGGGAGCTGGAAGTTTATCAAA
TCGGGAGCTTCTTGCAGTGTTACTGAGAACAGGTTCTAAGGAAGAATCAGTTTTGAAGTTATCAGATAAAATTTTACATC
ACTTTGATGGTTTACGTATGCTGAAAGATGCAACGTTAGAAGAGCTTGTCAGTATACATGGTGTCGGGGTTGCAAAGGCA
ACTCAGCTTATAGCCGCTTTTGAACTCGGTAGAAGAATGGTGCGTTTAGAATATCAAAATAGATACAGCATTCGAAGCCC
GGAAGATTGCGCCACATACATGATGGAAGAAATGCGCTTCTTGCAGCAGGAGCATTTTGTATGTTTATATTTGAACACAA
AGAATCAAGTCATACATAGGCAAACGATTTTCATTGGAAGTTTAAATTCATCAATTGTACATCCAAGGGAAGTTTTTAAA
GAAGCGTTTCGCCGTGCAGCAGCCTCTATCATATGTCTTCATAACCATCCCTCAGGAGACCCCGCGCCGAGCCGAGAAGA
TATTGAAGTAACGAAACGCTTAGTAGAATGCGGTCGAATTATCGGAATTGAAGTGCTTGACCATATTATAATAGGTGACC
ATAAATTCGTGAGTTTAAAGGAAAAAGGTCATATTTAA

Upstream 100 bases:

>100_bases
TCACGTCTTGTTCGGGAATTAAAACAATTTAATATTGATGTAACCCATGCGTAAAATTGCATGGGATTTTCTTTGAGAGA
ACAAATAAAGGGGTGGAGAA

Downstream 100 bases:

>100_bases
GACTATGCTTTTTACTTATTTTGTTTTATAATGTGATTTATGAGTTTTTTGTAGAAAATTATCTACAAAAAGGATAAAGA
TATAAAAAACGTACTGTTTT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELVSIHGVGVAKA
TQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFK
EAFRRAAASIICLHNHPSGDPAPSREDIEVTKRLVECGRIIGIEVLDHIIIGDHKFVSLKEKGHI

Sequences:

>Translated_225_residues
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELVSIHGVGVAKA
TQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFK
EAFRRAAASIICLHNHPSGDPAPSREDIEVTKRLVECGRIIGIEVLDHIIIGDHKFVSLKEKGHI
>Mature_225_residues
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELVSIHGVGVAKA
TQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFK
EAFRRAAASIICLHNHPSGDPAPSREDIEVTKRLVECGRIIGIEVLDHIIIGDHKFVSLKEKGHI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=36.6197183098592, Blast_Score=154, Evalue=3e-39,
Organism=Escherichia coli, GI1788997, Length=121, Percent_Identity=42.1487603305785, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788312, Length=111, Percent_Identity=42.3423423423423, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI2367100, Length=111, Percent_Identity=42.3423423423423, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4187_BACHK (Q6HD72)

Other databases:

- EMBL:   AE017355
- RefSeq:   YP_038504.1
- ProteinModelPortal:   Q6HD72
- SMR:   Q6HD72
- EnsemblBacteria:   EBBACT00000075972
- GeneID:   2853908
- GenomeReviews:   AE017355_GR
- KEGG:   btk:BT9727_4187
- GeneTree:   EBGT00050000002627
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- BioCyc:   BTHU281309:BT9727_4187-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25632; Mature: 25632

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRM
CCCHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LKDATLEELVSIHGVGVAKATQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHH
LQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFKEAFRRAAASIICLHNHPSGD
HHHCCEEEEEECCCCCEEEHHEEEEECCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCC
PAPSREDIEVTKRLVECGRIIGIEVLDHIIIGDHKFVSLKEKGHI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
>Mature Secondary Structure
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRM
CCCHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LKDATLEELVSIHGVGVAKATQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHH
LQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFKEAFRRAAASIICLHNHPSGD
HHHCCEEEEEECCCCCEEEHHEEEEECCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCC
PAPSREDIEVTKRLVECGRIIGIEVLDHIIIGDHKFVSLKEKGHI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA