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The map label for this gene is yvcP [H]

Identifier: 49187332

GI number: 49187332

Start: 4248750

End: 4249457

Strand: Reverse

Name: yvcP [H]

Synonym: BAS4337

Alternate gene names: 49187332

Gene position: 4249457-4248750 (Counterclockwise)

Preceding gene: 49187333

Following gene: 49187331

Centisome position: 81.27

GC content: 37.99

Gene sequence:

>708_bases
ATGTATAAAATATTAATTGTAGAAGATGATGAGAAAATTGCGGGGATATTAGAGGAGCATTTAGAAAGGTATGGCTATCA
GTCATTTAGAGCAAGTGATTTACGACATATAAAAGATGAGTTTGTAAAAGTAAATCCACATCTCGTGTTACTTGATATTA
ATTTACCGTATTTTGATGGGTTCTATTGGTGTCGTCAAATTCGCACTGTATCGAATGCACCAATTATTTTTGTTTCTGCA
AGAACGGGGGAAATGGATCAAGTAATGGCAATTGAAAATGGCGGAGATGATTACATTACGAAGCCATTTCATTTAGACGT
TGTAATGGCTAAGGTAAAAAGTGCACTTCGACGTGGGTATGGTGAGTACGCTTCTGCGGCAGAAAGCGATTGCTTAGGAG
TAAATGGATTGTTGTTATTCCCGTCTCAGCACGTTGTTGAGTGGCAAGGACAACAAACAGAACTGACAAAAAATGAATTT
TACTTATTAGAGTGTTTAATGAAACAAGCAAATCAATATGTAACGCGTGAAGAATTGTTAGAAGCCCTCTGGGATGAGGT
AGCTTTCGTTGATGACAATACATTAACCGTGAATGTGAAACGTGTAAGGAAGAAACTAGAGGAGCTAGGCATTAAAAATG
CAATTGTAACGAAACGTGGATACGGTTATGCGCTTCTTACAGAGTGGGGAGAAGGGCATGAAGGTTAA

Upstream 100 bases:

>100_bases
GTCTGATTTATACAGGAAAAAATCCCCACTAATTAAATTTTCAATTTATAATAGAAAAAGAAGTGGTTTTATAAGAATTT
TTTATGGGGAGAAAGCGAGT

Downstream 100 bases:

>100_bases
AAATTACCTCATGGACCGCTTTTCTTTAATTCTTTCTTATATTGTTAGCCTTTGTTTATTTGGGCTCGTTTTACAGTTGC
AAAGTCTTTTAGAAAAGCGA

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MYKILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINLPYFDGFYWCRQIRTVSNAPIIFVSA
RTGEMDQVMAIENGGDDYITKPFHLDVVMAKVKSALRRGYGEYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEF
YLLECLMKQANQYVTREELLEALWDEVAFVDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEWGEGHEG

Sequences:

>Translated_235_residues
MYKILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINLPYFDGFYWCRQIRTVSNAPIIFVSA
RTGEMDQVMAIENGGDDYITKPFHLDVVMAKVKSALRRGYGEYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEF
YLLECLMKQANQYVTREELLEALWDEVAFVDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEWGEGHEG
>Mature_235_residues
MYKILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINLPYFDGFYWCRQIRTVSNAPIIFVSA
RTGEMDQVMAIENGGDDYITKPFHLDVVMAKVKSALRRGYGEYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEF
YLLECLMKQANQYVTREELLEALWDEVAFVDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEWGEGHEG

Specific function: Member of the two-component regulatory system yvcQ/yvcP [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788394, Length=222, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1786599, Length=230, Percent_Identity=32.6086956521739, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1786911, Length=227, Percent_Identity=31.2775330396476, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1790860, Length=224, Percent_Identity=30.3571428571429, Blast_Score=113, Evalue=9e-27,
Organism=Escherichia coli, GI1789809, Length=235, Percent_Identity=28.5106382978723, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI87082012, Length=229, Percent_Identity=29.6943231441048, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI2367329, Length=231, Percent_Identity=30.7359307359307, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787229, Length=227, Percent_Identity=30.8370044052863, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790863, Length=225, Percent_Identity=29.7777777777778, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787375, Length=222, Percent_Identity=27.027027027027, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1789402, Length=226, Percent_Identity=30.5309734513274, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1790552, Length=226, Percent_Identity=31.4159292035398, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=30.3571428571429, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI145693140, Length=237, Percent_Identity=29.1139240506329, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788550, Length=116, Percent_Identity=30.1724137931034, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27003; Mature: 27003

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINLPYFDG
CEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCEEEEEECCCCHHHH
FYWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDVVMAKVKSALRRGY
HHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC
GEYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELL
CHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
EALWDEVAFVDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEWGEGHEG
HHHHHHEEEECCCEEEEEHHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MYKILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINLPYFDG
CEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCEEEEEECCCCHHHH
FYWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDVVMAKVKSALRRGY
HHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC
GEYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELL
CHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
EALWDEVAFVDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEWGEGHEG
HHHHHHEEEECCCEEEEEHHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]