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The map label for this gene is ydfM [H]

Identifier: 49187300

GI number: 49187300

Start: 4217708

End: 4218604

Strand: Reverse

Name: ydfM [H]

Synonym: BAS4305

Alternate gene names: 49187300

Gene position: 4218604-4217708 (Counterclockwise)

Preceding gene: 49187301

Following gene: 49187299

Centisome position: 80.68

GC content: 38.46

Gene sequence:

>897_bases
ATGATGGAAAAAGATGAACGTTTTAAACAGGCCGAGTTTGGTGCTATTGTCGGGATCGTTGGTAATATTATATTAGCGAT
TATAAAGGCGGTAATTGGTTATATTGGGAACAGTAAAGCGCTATTAGCGGATGCCGTGCATTCTGCATCGGATGTAATTG
GTTCGCTAGCTGTACTGTTTGGGTTACGAGCAGCAAAGCAGCCGCCCGATGAAGATCATCCGTATGGTCATGGTAAAGCG
GAATCGATTTCAGCAATTATTGTTGCAGTATTATTATTTATTGTGGGAATCGAGATAGCGATTTCGTCCATAAAAGCTTT
TTCGCAGGAACTAGAACCACCGAAAGGGATTACAATTTTTGCTGTCGTTCTTTCGATTGTTGTGAAAGAAGGAATGTTTC
AATATAAATTCCGATTAGGGAAAAGGGTAAATAGTGATGCAATTATTGCAAATGCATATGAGCACCGTTCAGATGTGTTT
TCTTCAATTGCAGCTTTAATCGGTATTTGTGCAGCGATTATTGGTGGTAAGTTCGGGTTAGATTGGCTTGTGTATGCCGA
TCCAATTGCAGGATTATTTGTTTCACTTCTTGTTGCAAAAATGGCATGGAGTATTGGGGCAGAAGCAATTCATGCAACGC
TTGATCATGTTCTTCATGAGGAAGATGTTATTCCGCTTAGAGAAGCAGTACTTCAAATAGACGGTGTAAAAAAAATTGGT
TCTTTATACGCAAGGGAACATGGTCATTACGTTATTGTTGATATTAAAGTTTCTGTAGATCCATACATTACTGTAGAAGA
AGGGCATCGCATTGGAAAGCATGTGAAAGAAACGCTTATGAAACAAGATAACGTACAAAATGTGTTTGTACATATAAATC
CGTATTCTCCAAATTAA

Upstream 100 bases:

>100_bases
ATAAGATAGTTACTTTGAAATGGTGAAATGGAAGAAAGTGGTGATGTTATCGCTGTTTTTGTTACAATAAAAAGATAGGT
TAAGAAAAGAAGGGATTTTA

Downstream 100 bases:

>100_bases
ACATTATTAACATTTTAGTATATAGATATTGCATCGTAGTTTGCATTATATTGTCACCCCTTAATCTGTCTTGTATAATG
AACAGGTTAAGGGGTGATTT

Product: cation efflux family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MMEKDERFKQAEFGAIVGIVGNIILAIIKAVIGYIGNSKALLADAVHSASDVIGSLAVLFGLRAAKQPPDEDHPYGHGKA
ESISAIIVAVLLFIVGIEIAISSIKAFSQELEPPKGITIFAVVLSIVVKEGMFQYKFRLGKRVNSDAIIANAYEHRSDVF
SSIAALIGICAAIIGGKFGLDWLVYADPIAGLFVSLLVAKMAWSIGAEAIHATLDHVLHEEDVIPLREAVLQIDGVKKIG
SLYAREHGHYVIVDIKVSVDPYITVEEGHRIGKHVKETLMKQDNVQNVFVHINPYSPN

Sequences:

>Translated_298_residues
MMEKDERFKQAEFGAIVGIVGNIILAIIKAVIGYIGNSKALLADAVHSASDVIGSLAVLFGLRAAKQPPDEDHPYGHGKA
ESISAIIVAVLLFIVGIEIAISSIKAFSQELEPPKGITIFAVVLSIVVKEGMFQYKFRLGKRVNSDAIIANAYEHRSDVF
SSIAALIGICAAIIGGKFGLDWLVYADPIAGLFVSLLVAKMAWSIGAEAIHATLDHVLHEEDVIPLREAVLQIDGVKKIG
SLYAREHGHYVIVDIKVSVDPYITVEEGHRIGKHVKETLMKQDNVQNVFVHINPYSPN
>Mature_298_residues
MMEKDERFKQAEFGAIVGIVGNIILAIIKAVIGYIGNSKALLADAVHSASDVIGSLAVLFGLRAAKQPPDEDHPYGHGKA
ESISAIIVAVLLFIVGIEIAISSIKAFSQELEPPKGITIFAVVLSIVVKEGMFQYKFRLGKRVNSDAIIANAYEHRSDVF
SSIAALIGICAAIIGGKFGLDWLVYADPIAGLFVSLLVAKMAWSIGAEAIHATLDHVLHEEDVIPLREAVLQIDGVKKIG
SLYAREHGHYVIVDIKVSVDPYITVEEGHRIGKHVKETLMKQDNVQNVFVHINPYSPN

Specific function: Unknown

COG id: COG0053

COG function: function code P; Predicted Co/Zn/Cd cation transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family [H]

Homologues:

Organism=Escherichia coli, GI1790349, Length=284, Percent_Identity=26.056338028169, Blast_Score=95, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI115533508, Length=279, Percent_Identity=21.8637992831541, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI115533506, Length=279, Percent_Identity=21.8637992831541, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI72000060, Length=304, Percent_Identity=22.3684210526316, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI72000062, Length=304, Percent_Identity=22.3684210526316, Blast_Score=72, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6325032, Length=254, Percent_Identity=31.1023622047244, Blast_Score=105, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6323831, Length=247, Percent_Identity=28.7449392712551, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002524 [H]

Pfam domain/function: PF01545 Cation_efflux [H]

EC number: NA

Molecular weight: Translated: 32296; Mature: 32296

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEKDERFKQAEFGAIVGIVGNIILAIIKAVIGYIGNSKALLADAVHSASDVIGSLAVLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
GLRAAKQPPDEDHPYGHGKAESISAIIVAVLLFIVGIEIAISSIKAFSQELEPPKGITIF
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
AVVLSIVVKEGMFQYKFRLGKRVNSDAIIANAYEHRSDVFSSIAALIGICAAIIGGKFGL
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DWLVYADPIAGLFVSLLVAKMAWSIGAEAIHATLDHVLHEEDVIPLREAVLQIDGVKKIG
CHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SLYAREHGHYVIVDIKVSVDPYITVEEGHRIGKHVKETLMKQDNVQNVFVHINPYSPN
HHHHHCCCCEEEEEEEEECCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MMEKDERFKQAEFGAIVGIVGNIILAIIKAVIGYIGNSKALLADAVHSASDVIGSLAVLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
GLRAAKQPPDEDHPYGHGKAESISAIIVAVLLFIVGIEIAISSIKAFSQELEPPKGITIF
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
AVVLSIVVKEGMFQYKFRLGKRVNSDAIIANAYEHRSDVFSSIAALIGICAAIIGGKFGL
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DWLVYADPIAGLFVSLLVAKMAWSIGAEAIHATLDHVLHEEDVIPLREAVLQIDGVKKIG
CHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SLYAREHGHYVIVDIKVSVDPYITVEEGHRIGKHVKETLMKQDNVQNVFVHINPYSPN
HHHHHCCCCEEEEEEEEECCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]