Click here to switch to the map view.

The map label for this gene is yrvN [H]

Identifier: 49187290

GI number: 49187290

Start: 4204702

End: 4205988

Strand: Direct

Name: yrvN [H]

Synonym: BAS4294

Alternate gene names: 49187290

Gene position: 4204702-4205988 (Clockwise)

Preceding gene: 49187283

Following gene: 49187291

Centisome position: 80.42

GC content: 39.63

Gene sequence:

>1287_bases
ATGAAACAACCACTCGCACATCGAATGCGCCCTACAAATATTCAAGAAGTTATCGGACAACAACATTTAGTTGGCGAAGG
AAAAATTTTATGGCGAATGGTCCAAGCGAATCATTTTCAATCTATGATTTTATATGGCCCTCCAGGCACTGGAAAAACAT
CTATCGCGAGCGCAATTGCCGGAAGTACCGGAACCCCTTTTCGCCTATTAAACGCTGTTACTCATAATAAAAAAGATATG
GAAGTTGTCGTACAAGAAGCAAAGATGCATCGACACCTCGTTTTAATTTTAGATGAAGTACACCGTCTAGATAAAGCAAA
GCAGGATTTTCTATTACCTCATTTAGAAAGCGGACTTCTTACCTTAATTGGTGCAACGACGAGTAATCCCTTCCATGCGA
TAAACTCCGCTATTCGAAGTCGTTGTCAAATCTTCGAATTACACGCATTAACAGAAGAGGATCTTTTAATTGGCTTAAAA
CGAGCACTTGAAGATAAAGAAAAAGGTCTTGGGGAATATGATGTAACTGTTACGCCTGAAGCATTACATCACTTTGCAAA
TGCATCAGGCGGAGATATGCGTTCCGCTTATAATGCACTTGAACTAGCTGTTTTATCTAGCTTTACAACTGATGACAAAG
CTGCGGAAATCACGCTAGAAATCGCAGAAGAATGCTTACAAAAAAAGAGCTTCGTTCATGATAAAGGTGGAGATGCTCAT
TATGACGTATTATCGGCATTTCAAAAATCGGTGCGCGGAAGCGATGTAAATGCAGCACTTCATTATTTAGCACGTCTTAT
TGAAGCTGGTGATTTACAAAGCATCGGTAGACGTCTTCTTATTATGGCATATGAAGATATTGGACTTGCTAGCCCGCAAG
CTGGACCGCGTACACTAGCAGCTATAGAATCAGCGGAACGAGTTGGATTCCCAGAAGCACGCATACCACTTGCAAATGCT
GTTATCGAGCTTTGCTTATCACCTAAATCGAACTCAGCTTATAAAGCACTTGATGCTGCATTACACGATTTACGTAACGG
TCAAACAGGCGATATCCCAAGTCATTTAAAAGATAGTCATTATAAAGGCGCAGAGGCACTTGGAAGAGGCATTGGATACT
TATACCCACACGACCAACCAAATGGCTGGGTACAACAACAATACTTACCTGATAAAATAAAAAACAAACAATATTATAAA
CCAAAAACGACAGGAAAATTTGAGCAAGCACTTTCTACTGTATATGAAAGATTACAAAGTTCGAATAAAACAAAAAATAA
AGGGTAA

Upstream 100 bases:

>100_bases
ATTCATATTCATTTTTCCCACAAAACAGCATCCTATTTCAAATTCCACTAAAAAAAATGATACGATAGAAAGAGATTATA
CATTAAGGGAGACGGTAAAA

Downstream 100 bases:

>100_bases
CATAAGCGAAAACGTCACCATTATGGAGGCTTCACTTATGAAAACACGTCAAGATGCATGGACAAAAGAAGACGATCTCC
TTTTAGCCGAAACTGTTTTA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MKQPLAHRMRPTNIQEVIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDM
EVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRCQIFELHALTEEDLLIGLK
RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAH
YDVLSAFQKSVRGSDVNAALHYLARLIEAGDLQSIGRRLLIMAYEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANA
VIELCLSPKSNSAYKALDAALHDLRNGQTGDIPSHLKDSHYKGAEALGRGIGYLYPHDQPNGWVQQQYLPDKIKNKQYYK
PKTTGKFEQALSTVYERLQSSNKTKNKG

Sequences:

>Translated_428_residues
MKQPLAHRMRPTNIQEVIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDM
EVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRCQIFELHALTEEDLLIGLK
RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAH
YDVLSAFQKSVRGSDVNAALHYLARLIEAGDLQSIGRRLLIMAYEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANA
VIELCLSPKSNSAYKALDAALHDLRNGQTGDIPSHLKDSHYKGAEALGRGIGYLYPHDQPNGWVQQQYLPDKIKNKQYYK
PKTTGKFEQALSTVYERLQSSNKTKNKG
>Mature_428_residues
MKQPLAHRMRPTNIQEVIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDM
EVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRCQIFELHALTEEDLLIGLK
RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAH
YDVLSAFQKSVRGSDVNAALHYLARLIEAGDLQSIGRRLLIMAYEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANA
VIELCLSPKSNSAYKALDAALHDLRNGQTGDIPSHLKDSHYKGAEALGRGIGYLYPHDQPNGWVQQQYLPDKIKNKQYYK
PKTTGKFEQALSTVYERLQSSNKTKNKG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=34.3181818181818, Blast_Score=248, Evalue=7e-66,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=30.9090909090909, Blast_Score=203, Evalue=2e-52,
Organism=Homo sapiens, GI31563534, Length=218, Percent_Identity=27.5229357798165, Blast_Score=70, Evalue=4e-12,
Organism=Escherichia coli, GI1787119, Length=428, Percent_Identity=39.7196261682243, Blast_Score=301, Evalue=5e-83,
Organism=Saccharomyces cerevisiae, GI6324111, Length=425, Percent_Identity=34.1176470588235, Blast_Score=239, Evalue=7e-64,
Organism=Saccharomyces cerevisiae, GI6324039, Length=317, Percent_Identity=24.6056782334385, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 47166; Mature: 47166

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQPLAHRMRPTNIQEVIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIA
CCCCHHHCCCCCCHHHHHCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHC
GSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCE
TLIGATTSNPFHAINSAIRSRCQIFELHALTEEDLLIGLKRALEDKEKGLGEYDVTVTPE
EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEECHH
ALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAH
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
YDVLSAFQKSVRGSDVNAALHYLARLIEAGDLQSIGRRLLIMAYEDIGLASPQAGPRTLA
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHEEEEEECCCCCCCCCCCCHHHH
AIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHDLRNGQTGDIPSHLKDSH
HHHHHHHCCCCHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCC
YKGAEALGRGIGYLYPHDQPNGWVQQQYLPDKIKNKQYYKPKTTGKFEQALSTVYERLQS
CCCHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
SNKTKNKG
CCCCCCCC
>Mature Secondary Structure
MKQPLAHRMRPTNIQEVIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIA
CCCCHHHCCCCCCHHHHHCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHC
GSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCE
TLIGATTSNPFHAINSAIRSRCQIFELHALTEEDLLIGLKRALEDKEKGLGEYDVTVTPE
EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEECHH
ALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAH
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
YDVLSAFQKSVRGSDVNAALHYLARLIEAGDLQSIGRRLLIMAYEDIGLASPQAGPRTLA
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHEEEEEECCCCCCCCCCCCHHHH
AIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHDLRNGQTGDIPSHLKDSH
HHHHHHHCCCCHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCC
YKGAEALGRGIGYLYPHDQPNGWVQQQYLPDKIKNKQYYKPKTTGKFEQALSTVYERLQS
CCCHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
SNKTKNKG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]