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The map label for this gene is yqgF [C]

Identifier: 49187278

GI number: 49187278

Start: 4192257

End: 4192670

Strand: Reverse

Name: yqgF [C]

Synonym: BAS4282

Alternate gene names: 49187278

Gene position: 4192670-4192257 (Counterclockwise)

Preceding gene: 49187279

Following gene: 49187277

Centisome position: 80.19

GC content: 40.82

Gene sequence:

>414_bases
ATGCGGATATTAGGTTTAGATGTAGGTACAAAAACAGTCGGAGTTGCAATTAGTGACGAAATGGGCTGGACAGCGCAAGG
GCTTGAAACAATCAAGATTAACGAAGAACGAGGTCAATTTGGATTTGATCGCATTTCTGAGTTAGTAAAACAGTATGATG
TGGACAAGATAGTAGTAGGTTTACCTAAAAATATGAATGGTACAATTGGCCCGCGTGGTGAAGCATGCCAACAATTTGCA
GAAAACCTACGAGAGCTGTTACAATTAGACGTTGTAATGTGGGACGAGCGTTTGTCAACGATGGCAGCGGAACGTCTACT
CATTTCAGCGGATGTAAGCCGTAAGAAGCGAAAGCAAGTAATTGATAAGATGGCTGCAGTCGTAATCTTACAAGGATTTT
TAGATAGTAAATAA

Upstream 100 bases:

>100_bases
CCATAAAGATGCACGAAGCATCATTCGCAAGCTTGAACGTGATGAATTAATTGAAGAGCTTGTGAAGTCTTACTTGAAAC
ATCATCGTGAGGAGTAATTT

Downstream 100 bases:

>100_bases
GAGGTGACCAAAATGGAAGAAAATCAAATTACAATTGTAGACGAAAAAGGTAACGAACATTTATGTGAAATTATTTTCAC
TTTTGACGCTGAAAAATTTG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGLPKNMNGTIGPRGEACQQFA
ENLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQVIDKMAAVVILQGFLDSK

Sequences:

>Translated_137_residues
MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGLPKNMNGTIGPRGEACQQFA
ENLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQVIDKMAAVVILQGFLDSK
>Mature_137_residues
MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGLPKNMNGTIGPRGEACQQFA
ENLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQVIDKMAAVVILQGFLDSK

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=34.5864661654135, Blast_Score=80, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_BACAA (C3P975)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002868674.1
- ProteinModelPortal:   C3P975
- SMR:   C3P975
- EnsemblBacteria:   EBBACT00000130626
- GeneID:   7848888
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_4634
- GeneTree:   EBGT00050000001393
- ProtClustDB:   PRK00109
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15296; Mature: 15296

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVG
CEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEE
LPKNMNGTIGPRGEACQQFAENLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDKMAAVVILQGFLDSK
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVG
CEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEE
LPKNMNGTIGPRGEACQQFAENLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDKMAAVVILQGFLDSK
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA