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The map label for this gene is ydcN [H]

Identifier: 49187254

GI number: 49187254

Start: 4170781

End: 4171326

Strand: Direct

Name: ydcN [H]

Synonym: BAS4258

Alternate gene names: 49187254

Gene position: 4170781-4171326 (Clockwise)

Preceding gene: 49187250

Following gene: 49187268

Centisome position: 79.77

GC content: 37.0

Gene sequence:

>546_bases
ATGAATATTGGTTCTGCAATACGTGAAATTCGTCAACGTAGAGGCATAACAATTGCACAAATTTGTGAGGGAACAGGTCT
TTCTAAAGGGTTTATGAGTCAGGTTGAAAATAATAAAACATCACCATCTATCTCAACTTTAGAAACGATCTCCAATTTTT
TAAACGTTCCTCTTCCCTATTTATTGTTAGAACAAAAAGATCGATTGAAAGTTGTCAAAAAGGTAGAGCGTAAATATAGT
GTATACGGAAAAGATGAACAAAGAATTGAACATGTTGCAGAGCAAGGTGGTCTTCGCCTCAATCTCGTAGAAATTCCTGC
TGGGTTTCCGAAAGAAAACACACCAAATGCCCATGAAGGAGAAGAATGTCACCTTGTATTACGCGGAAAACTAGAAGTTC
AACACGGAGAAGATGTTGCAATTGTAGAAGAAGGGGATTCTTTCTCCTGGAATGCATGTGTTCCTCATATCGTTCGTAAT
ATAGGAGAAGAAACTGCATTATTACTCATCTCTAGTCATGCTGAAAATCGAAAACGTGTTTATTAA

Upstream 100 bases:

>100_bases
ATACACTAATTTTTTTATTCGTCAATTCATTTTCACTGGGAAAATATATATTTTTTTTGCTATGATACAAATAGTTGTCT
ATAAAAAGGAGCTTGATTTT

Downstream 100 bases:

>100_bases
ACAAAAAAGAAGCCTGTAAATCAGGCTTCTTTTTATCCTCTTATAACTCCATAGCTTGTCCCAACTAGTACAGTTTTTTC
GTTTTGATTACGATAAACTG

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLLLEQKDRLKVVKKVERKYS
VYGKDEQRIEHVAEQGGLRLNLVEIPAGFPKENTPNAHEGEECHLVLRGKLEVQHGEDVAIVEEGDSFSWNACVPHIVRN
IGEETALLLISSHAENRKRVY

Sequences:

>Translated_181_residues
MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLLLEQKDRLKVVKKVERKYS
VYGKDEQRIEHVAEQGGLRLNLVEIPAGFPKENTPNAHEGEECHLVLRGKLEVQHGEDVAIVEEGDSFSWNACVPHIVRN
IGEETALLLISSHAENRKRVY
>Mature_181_residues
MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLLLEQKDRLKVVKKVERKYS
VYGKDEQRIEHVAEQGGLRLNLVEIPAGFPKENTPNAHEGEECHLVLRGKLEVQHGEDVAIVEEGDSFSWNACVPHIVRN
IGEETALLLISSHAENRKRVY

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=168, Percent_Identity=26.7857142857143, Blast_Score=70, Evalue=8e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20314; Mature: 20314

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY
CCHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHH
LLLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRLNLVEIPAGFPKENTPNAHEG
HHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCC
EECHLVLRGKLEVQHGEDVAIVEEGDSFSWNACVPHIVRNIGEETALLLISSHAENRKRV
CEEEEEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCHHEEEEEECCCCCCCCC
Y
C
>Mature Secondary Structure
MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY
CCHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHH
LLLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRLNLVEIPAGFPKENTPNAHEG
HHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCC
EECHLVLRGKLEVQHGEDVAIVEEGDSFSWNACVPHIVRNIGEETALLLISSHAENRKRV
CEEEEEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCHHEEEEEECCCCCCCCC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]