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The map label for this gene is deoB

Identifier: 49186995

GI number: 49186995

Start: 3936984

End: 3938168

Strand: Reverse

Name: deoB

Synonym: BAS3997

Alternate gene names: 49186995

Gene position: 3938168-3936984 (Counterclockwise)

Preceding gene: 49186996

Following gene: 49186994

Centisome position: 75.32

GC content: 38.4

Gene sequence:

>1185_bases
ATGAATAAATATAAACGTATATTCCTAGTCGTAATGGACTCTGTTGGAATCGGTGAAGCACCAGATGCTGAACAATTTGG
TGATTTAGGATCTGATACAATTGGTCACATTGCTGAACATATGAATGGATTACACATGCCTAACATGGTGAAATTAGGTC
TTGGTAACATTCGTGAAATGAAAGGCATCTCTAAAGTAGAAAAACCACTTGGATATTATACAAAAATGCAAGAGAAATCT
ACTGGTAAAGATACAATGACAGGACACTGGGAAATTATGGGTCTTTACATTGATACACCATTCCAAGTGTTCCCTGAAGG
ATTCCCGAAAGAATTACTTGATGAATTAGAAGAAAAAACAGGTCGTAAAATCATCGGTAATAAACCAGCTTCTGGAACTG
AAATTCTTGATGAACTTGGTCAAGAACAAATGGAAACAGGCTCTTTAATTGTTTACACTTCTGCTGATAGCGTTCTGCAA
ATCGCAGCACACGAAGAAGTAGTACCGCTTGATGAGTTGTATAAAATTTGTAAAATTGCACGTGAATTAACGTTAGATGA
GAAGTACATGGTAGGTCGCGTTATTGCTCGTCCATTCGTTGGTGAGCCTGGAAACTTTACACGTACACCGAACCGTCATG
ACTATGCATTAAAACCATTCGGCCGTACAGTAATGAATGAATTAAAAGATAGTGATTATGATGTGATTGCTATCGGTAAA
ATCTCTGACATCTATGATGGTGAAGGCGTAACTGAATCACTTCGTACGAAGTCTAACATGGATGGAATGGATAAGGTTGT
AGATACATTAAATATGGACTTTACAGGTCTTAGCTTCTTAAACTTAGTTGACTTTGATGCACTATTTGGTCACCGTCGTG
ACCCACAAGGATATGGAGAAGCTCTGCAAGAATATGATGCACGTCTTCCAGAAGTATTCGAAAAACTAAAAGAAGATGAT
CTATTATTAATTACAGCAGACCACGGTAATGACCCAGTTCACCACGGTACTGACCATACACGTGAATATGTACCGTTATT
AGCATATAGCCCAAGCATGAAAGAAGGCGGACAAGAGTTACCACTTCGTCAAACATTTGCTGATATTGGTGCAACTGTAG
CAGAAAACTTCGGTGTGAAAATGCCAGAATACGGAACAAGCTTCTTAAACGAGCTAAAGAAATAG

Upstream 100 bases:

>100_bases
TAATGAGAACGAAAGATAATTCTTATGGAGAACAGTTTCACTTTATAGCGTTTTGAACATACTACAAGAAGTAGAACTGA
ACTTATAGGAGGTCGCAGTT

Downstream 100 bases:

>100_bases
GGGGATAAACAAATGAATCGTGAACTTATTACAAAATCAGCTTCATACTTAAAAGAGAAATTTCAAGAGACACCACAAGT
AGGACTAATCCTTGGATCTG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLHMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKS
TGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQ
IAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
ISDIYDGEGVTESLRTKSNMDGMDKVVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFEKLKEDD
LLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNELKK

Sequences:

>Translated_394_residues
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLHMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKS
TGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQ
IAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
ISDIYDGEGVTESLRTKSNMDGMDKVVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFEKLKEDD
LLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNELKK
>Mature_394_residues
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLHMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKS
TGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQ
IAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
ISDIYDGEGVTESLRTKSNMDGMDKVVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFEKLKEDD
LLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNELKK

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=412, Percent_Identity=46.1165048543689, Blast_Score=339, Evalue=2e-94,
Organism=Escherichia coli, GI1789781, Length=434, Percent_Identity=26.9585253456221, Blast_Score=121, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_BACAA (C3P7M3)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002868388.1
- ProteinModelPortal:   C3P7M3
- SMR:   C3P7M3
- EnsemblBacteria:   EBBACT00000129134
- GeneID:   7851489
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_4330
- GeneTree:   EBGT00050000001645
- ProtClustDB:   PRK05362
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 44100; Mature: 44100

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLHMPNMVKLGLGNIREM
CCCHHEEEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCHHHH
KGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHCCCCCCHHHHHHHHHHC
GRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIA
CCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHH
RELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCEEEECC
ISDIYDGEGVTESLRTKSNMDGMDKVVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGE
CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
ALQEYDARLPEVFEKLKEDDLLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQEL
HHHHHHCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHEEECCCHHCCCCCC
PLRQTFADIGATVAENFGVKMPEYGTSFLNELKK
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLHMPNMVKLGLGNIREM
CCCHHEEEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCHHHH
KGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHCCCCCCHHHHHHHHHHC
GRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIA
CCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHH
RELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCEEEECC
ISDIYDGEGVTESLRTKSNMDGMDKVVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGE
CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
ALQEYDARLPEVFEKLKEDDLLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQEL
HHHHHHCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHEEECCCHHCCCCCC
PLRQTFADIGATVAENFGVKMPEYGTSFLNELKK
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA