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The map label for this gene is yizB [H]

Identifier: 49186938

GI number: 49186938

Start: 3887202

End: 3887534

Strand: Reverse

Name: yizB [H]

Synonym: BAS3940

Alternate gene names: 49186938

Gene position: 3887534-3887202 (Counterclockwise)

Preceding gene: 49186940

Following gene: 49186937

Centisome position: 74.35

GC content: 40.24

Gene sequence:

>333_bases
ATGTCGACAAGTCAAATGCTGAAAGGGATTTTAGAGGGATGCTTACTTGCTATTATTTCTGAAGGTGAAATATACGGTTA
TGAAATGAGTGAGAAGCTAGCAAAGTATGGCTTTACAATGGCGAGTGAGGGAAGTATTTATCCGTTATTAATACGAATGC
AAAAGGAAGGATTCATAACAAGTGTAATGAAGGAATCCCCATCTGGTCCAAAACGGAAGTATTACACGTTAACAGAAGAT
GGCGAAGATGCACTGGATGAATTTATGGATCGCTGGGAAGCGATGCAAAGTAGTGTGGAGCGTCTACTTGAAGGGAAGGG
GAAAAGAAGATAA

Upstream 100 bases:

>100_bases
CTATCTTGTTTTGCAAAATAGTCTTTGCTATACTATTTTGCAAAGCAAGATACTTACGCTTATCTATCTTGTAAAACAAG
ATAGTAGGAGGATTTGAATT

Downstream 100 bases:

>100_bases
TGCTATCAAATGAAGCACGAAAGTTTTTATTAGATATGAGGTTGTTTTTGACTGCAAAGAGTGTGAAAGAAAGCGATATT
GAAAGCTTTATTGAAGACGC

Product: PadR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MSTSQMLKGILEGCLLAIISEGEIYGYEMSEKLAKYGFTMASEGSIYPLLIRMQKEGFITSVMKESPSGPKRKYYTLTED
GEDALDEFMDRWEAMQSSVERLLEGKGKRR

Sequences:

>Translated_110_residues
MSTSQMLKGILEGCLLAIISEGEIYGYEMSEKLAKYGFTMASEGSIYPLLIRMQKEGFITSVMKESPSGPKRKYYTLTED
GEDALDEFMDRWEAMQSSVERLLEGKGKRR
>Mature_109_residues
STSQMLKGILEGCLLAIISEGEIYGYEMSEKLAKYGFTMASEGSIYPLLIRMQKEGFITSVMKESPSGPKRKYYTLTEDG
EDALDEFMDRWEAMQSSVERLLEGKGKRR

Specific function: Unknown

COG id: COG1695

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005149
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03551 PadR [H]

EC number: NA

Molecular weight: Translated: 12494; Mature: 12362

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSQMLKGILEGCLLAIISEGEIYGYEMSEKLAKYGFTMASEGSIYPLLIRMQKEGFIT
CCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCCCEEHHEEEECCCHHHH
SVMKESPSGPKRKYYTLTEDGEDALDEFMDRWEAMQSSVERLLEGKGKRR
HHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STSQMLKGILEGCLLAIISEGEIYGYEMSEKLAKYGFTMASEGSIYPLLIRMQKEGFIT
CHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCCCEEHHEEEECCCHHHH
SVMKESPSGPKRKYYTLTEDGEDALDEFMDRWEAMQSSVERLLEGKGKRR
HHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]